INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MK290764	Staphylococcus phage B122	43108	34.987	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus CCM7722	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phietavirus	Phietavirus B122	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;antirepressor orf_8;integrase orf_38
MK291441	Paracoccus phage vB_PbeS_Pben1	39879	64.262	Paracoccus	Group I	Peebenunavirus	Peebenunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paracoccus bengalensis DSM 17099	High-quality	High-quality	100.000	AAI-based (high-confidence)	Peebenunavirus	Peebenunavirus Pben1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1
MK291442	Paracoccus phage vB_PkoS_Pkon1	49723	60.626	Paracoccus	Group I	Peekonunavirus	Peekonunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paracoccus kondratievae NCIMB 13773T	High-quality	High-quality	100.000	AAI-based (high-confidence)	Peekonunavirus	Peekonunavirus Pkon1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1
MK291443	Paracoccus phage vB_PsuS_Psul1	37901	60.901	Paracoccus	Group I	Peesulunavirus	Peesulunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paracoccus sulfuroxidans JCM 14013	High-quality	High-quality	100.000	AAI-based (high-confidence)	Peesulunavirus	Peesulunavirus Psul1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK291444	Paracoccus phage vB_PthS_Pthi1	39547	63.843	Paracoccus	Group I	Peethiunavirus	Peethiunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paracoccus thiocyanatus JCM 20756	High-quality	High-quality	100.000	AAI-based (high-confidence)	Peethiunavirus	Peethiunavirus Pthi1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1
MK291445	Paracoccus phage vB_PyeM_Pyei1	50161	65.493	Paracoccus	Group I	Peeyeiunavirus	Peeyeiunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paracoccus yeei CCUG 32053	High-quality	High-quality	100.000	AAI-based (high-confidence)	Peeyeiunavirus	Peeyeiunavirus Pyei1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK295203	Escherichia phage vB_EcoM_005	155101	39.327	Escherichia	Group I	Dhakavirus	Dhakavirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157: H7	High-quality	High-quality	91.210	AAI-based (high-confidence)	Dhakavirus	Dhakavirus ecom005	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK295204	Shigella phage vB_SflM_004	166138	31.498	Shigella	Group I	Ounavirinae	Unclassified	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Shigella sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Bragavirus	Bragavirus p43	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK295205	Shigella phage vB_SdyM_006	85887	38.619	Shigella	Group I	Bragavirus	Bragavirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Shigella sp.	High-quality	High-quality	97.540	AAI-based (high-confidence)	Felixounavirus	Felixounavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK301437	Lactococcus phage 1W08F	30633	34.887	Lactococcus	Group I	Skunavirus	Skunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Skunavirus	Skunavirus sv512	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic