INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MH976512	Gordonia phage Geodirt	59495	67.656	Gordonia	Group I	Vividuovirus	Vividuovirus	Schenleyvirinae	Stackebrandtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Vividuovirus	Vividuovirus geodirt	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH976513	Gordonia phage Kroos	57973	68.130	Gordonia	Group I	Kroosvirus	Kroosvirus	Schenleyvirinae	Stackebrandtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	98.690	AAI-based (high-confidence)	Kroosvirus	Kroosvirus kroos	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MH976514	Gordonia phage Nordenberg	57572	67.253	Gordonia	Group I	Vividuovirus	Vividuovirus	Schenleyvirinae	Stackebrandtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	97.620	AAI-based (high-confidence)	Vividuovirus	Vividuovirus nordenberg	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH976515	Gordonia phage Octobien14	76358	58.733	Gordonia	Group I	Octobienvirus	Octobienvirus	Deeyouvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Octobienvirus	Octobienvirus octobien14	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_4
MH976516	Corynebacterium phage PeteyPab	66432	52.300	Corynebacterium	Group I	Ceetrepovirus	Ceetrepovirus	Toshachvirinae	Zierdtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Corynebacterium vitaeruminis NCIB 9291	High-quality	High-quality	98.670	AAI-based (high-confidence)	Ceetrepovirus	Ceetrepovirus zion	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH976517	Mycobacterium phage Popcicle	50075	64.054	Mycobacterium	Group I	Veracruzvirus	Veracruzvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Veracruzvirus	Veracruzvirus veracruz	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_29;immunity orf_63
MH976518	Gordonia phage Stultus	57916	67.738	Gordonia	Group I	Vividuovirus	Vividuovirus	Schenleyvirinae	Stackebrandtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	98.260	AAI-based (high-confidence)	Vividuovirus	Vividuovirus stultus	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH976519	Gordonia phage Tangent	58281	67.180	Gordonia	Group I	Vividuovirus	Vividuovirus	Schenleyvirinae	Stackebrandtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	98.820	AAI-based (high-confidence)	Vividuovirus	Vividuovirus tangent	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH979674	Pseudomonas phage RLP	43446	62.093	Pseudomonas	Group I	Phikmvvirus	Phikmvvirus	Krylovirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phikmvvirus	Phikmvvirus RLP	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH983004	Lactobacillus phage BH1	40721	44.834	Lactobacillus	Group I	Behunavirus	Behunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus rhamnosus	High-quality	High-quality	97.240	AAI-based (high-confidence)	Behunavirus	Behunavirus BH1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_23;cro orf_50