INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MH937508	Streptococcus phage CHPC1156	34912	38.998	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	94.510	AAI-based (high-confidence)	Moineauvirus	Moineauvirus CHPC1156	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH937509	Streptococcus phage CHPC1230	39384	39.473	Streptococcus	Group I	Brussowvirus	Brussowvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Brussowvirus	Brussowvirus CHPC1230	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	antirepressor orf_36;cro orf_37
MH937510	Streptococcus phage CHPC1246	36876	39.229	Streptococcus	Group I	Brussowvirus	Brussowvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	96.590	AAI-based (high-confidence)	Brussowvirus	Brussowvirus CHPC1246	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	antirepressor orf_35;cro orf_36
MH937511	Streptococcus phage CHPC1247	35543	39.760	Streptococcus	Group I	Brussowvirus	Brussowvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	93.190	AAI-based (high-confidence)	Brussowvirus	Brussowvirus CHPC1247	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	antirepressor orf_29;cro orf_30
MH939157	Meiothermus phage MMP17	33172	63.858	Meiothermus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Meiothermus sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MH940212	Salmonella phage PS5	158400	44.800	Salmonella	Group I	Kuttervirus	Kuttervirus	Cvivirinae	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kuttervirus	Kuttervirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH972260	Staphylococcus phage Pabna	17700	29.362	Staphylococcus	Group I	Rosenblumvirus	Rosenblumvirus	Rakietenvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus subsp. aureus RN4220	High-quality	High-quality	100.000	AAI-based (high-confidence)	Rosenblumvirus	Rosenblumvirus pabna	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH972261	Staphylococcus phage Pike	18376	29.909	Staphylococcus	Group I	Andhravirus	Andhravirus	Rakietenvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus epidermidis LM1680	Complete	High-quality	100.000	ITR (high-confidence)	Andhravirus	Andhravirus andhra	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH972262	Staphylococcus phage Pontiff	18364	29.955	Staphylococcus	Group I	Andhravirus	Andhravirus	Rakietenvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus epidermidis RP62A	Complete	High-quality	100.000	ITR (high-confidence)	Andhravirus	Andhravirus andhra	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH972263	Staphylococcus phage JBug18	18547	29.590	Staphylococcus	Group I	Andhravirus	Andhravirus	Rakietenvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus epidermidis LM1680	High-quality	High-quality	100.000	AAI-based (high-confidence)	Andhravirus	Andhravirus andhra	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic