INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH884509 | Bacillus phage vB_BboS-125 | 58528 | 48.568 | Bacillus | Group I | Elmenteitavirus | Elmenteitavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus bogoriensis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Elmenteitavirus | Elmenteitavirus ev125 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH884510 | Exiguobacterium phage vB_EalM-137 | 41601 | 50.431 | Exiguobacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Exiguobacterium alkaliphilum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_9 |
| MH884511 | Exiguobacterium phage vB_EalM-132 | 145804 | 40.620 | Exiguobacterium | Group I | Spounavirinae | Unclassified | Spounavirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Exiguobacterium alkaliphilum | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MH884512 | Bacillus phage vB_BpsS-140 | 55091 | 39.841 | Bacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus pseudalcaliphilus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MH884513 | Bacillus phage vB_BpsS-36 | 50485 | 41.143 | Bacillus | Group I | Nairobivirus | Nairobivirus | Unclassified | Ehrlichviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus pseudalcaliphilus | Complete | High-quality | 100.000 | DTR (high-confidence) | Nairobivirus | Nairobivirus nv36 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH884514 | Bacillus phage vB_BpsM-61 | 48160 | 43.142 | Bacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus pseudofirmus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MH884648 | Caulobacter phage Kronos | 42424 | 66.290 | Caulobacter | Group I | Kronosvirus | Kronosvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter sp. CBR1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kronosvirus | Kronosvirus pelion | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH892350 | Streptococcus phage SW16 | 32106 | 36.953 | Streptococcus | Group I | Piorkowskivirus | Piorkowskivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus | High-quality | High-quality | 98.570 | AAI-based (high-confidence) | Piorkowskivirus | Piorkowskivirus SW16 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_27 |
| MH892351 | Streptococcus phage SW6 | 34276 | 38.642 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus | High-quality | High-quality | 93.390 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus SW6 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_26 |
| MH892352 | Streptococcus phage SW1 | 34821 | 38.850 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus | High-quality | High-quality | 93.800 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus SW1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_24;antirepressor orf_26;cro orf_27 |