INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH845412 | Cronobacter phage CS01 | 48195 | 50.109 | Cronobacter | Group I | Kyungwonvirus | Kyungwonvirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii NCTC 11467 | High-quality | High-quality | 95.420 | AAI-based (high-confidence) | Kyungwonvirus | Kyungwonvirus CS01 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH853355 | Streptococcus phage LF1 | 37421 | 36.904 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus agalactiae | High-quality | High-quality | 98.390 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_41;cro orf_45 |
| MH853356 | Streptococcus phage LF2 | 44768 | 36.718 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus agalactiae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_27 |
| MH853357 | Streptococcus phage LF3 | 32205 | 40.230 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus agalactiae | High-quality | High-quality | 96.210 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_22;cro orf_44;integrase orf_46 |
| MH853358 | Streptococcus phage LF4 | 37421 | 37.022 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus agalactiae | High-quality | High-quality | 98.380 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_41;cro orf_45 |
| MH853786 | Acinetobacter phage vB_AbaM_IME285 | 45063 | 37.869 | Acinetobacter | Group I | Obolenskvirus | Obolenskvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Obolenskvirus | Obolenskvirus IME285 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MH853787 | Acinetobacter phage vB_AbaM_IME284 | 43557 | 38.302 | Acinetobacter | Group I | Beijingvirus | Beijingvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 96.990 | AAI-based (high-confidence) | Beijingvirus | Beijingvirus IME284 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MH853788 | Acinetobacter phage vB_AbaM_IME512 | 46499 | 37.558 | Acinetobacter | Group I | Burnvirus | Burnvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Burnvirus | Burnvirus IME512 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MH880817 | Enterococcus phage EfV12-phi1 | 152770 | 37.020 | Enterococcus | Group I | Schiekvirus | Schiekvirus | Brockvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecium TX1330 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Schiekvirus | Schiekvirus EfV12 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH884508 | Bacillus phage vB_BcoS-136 | 160590 | 32.163 | Bacillus | Group I | Kenyattavirus | Kenyattavirus | Heleneionescovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cohnii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kenyattavirus | Kenyattavirus kv136 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_127 |