INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MH744414	Mycobacterium phage Arcanine	52273	63.704	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fromanvirus	Fromanvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_35;immunity orf_72
MH744415	Mycobacterium phage ArcusAngelus	58569	61.396	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus arcusangelus	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_46;immunity orf_48
MH744416	Microbacterium phage Dongwon	17362	68.517	Microbacterium	Group I	Paopuvirus	Paopuvirus	Pelczarvirinae	Orlajensenviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	99.780	AAI-based (high-confidence)	Paopuvirus	Paopuvirus paopu	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH744418	Streptomyces phage JustBecause	184281	66.565	Streptomyces	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces lividans JI 1326	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MH744419	Arthrobacter phage KBurrousTX	71020	62.295	Arthrobacter	Group I	Klausavirus	Klausavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	100.000	AAI-based (high-confidence)	Klausavirus	Klausavirus kburrousTX	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MH744423	Mycobacterium phage Saguaro	69448	69.538	Mycobacterium	Group I	Saguarovirus	Saguarovirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.330	AAI-based (high-confidence)	Saguarovirus	Saguarovirus saguaro	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH744424	Gordonia phage Turuncu	66808	65.383	Gordonia	Group I	Gruunavirus	Gruunavirus	Emilbogenvirinae	Zierdtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	99.960	AAI-based (high-confidence)	Gruunavirus	Gruunavirus turuncu	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH744425	Mycobacterium phage Wamburgrxpress	74392	58.771	Mycobacterium	Group I	Bronvirus	Bronvirus	Lclasvirinae	Vilmaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.400	AAI-based (high-confidence)	Bronvirus	Bronvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_34;cro orf_37
MH745368	Escherichia phage fp01	109515	39.003	Escherichia	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli; Salmonella sp.	High-quality	High-quality	96.930	AAI-based (high-confidence)	Tequintavirus	Tequintavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MH746814	Acinetobacter phage vB_AbaM_B09_Aci05	102789	37.207	Acinetobacter	Group I	Saclayvirus	Saclayvirus	Unclassified	Luriaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii Paris-B09	Complete	High-quality	100.000	DTR (high-confidence)	Saclayvirus	Saclayvirus Aci05	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic