Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
MH460825Paenibacillus phage Scottie5599048.519PaenibacillusGroup I HalcyonevirusHalcyonevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) HalcyonevirusHalcyonevirus scottieCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_37
MH460826Paenibacillus phage Heath5556048.571PaenibacillusGroup I HalcyonevirusHalcyonevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) HalcyonevirusHalcyonevirus halcyoneCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_35
MH460827Paenibacillus phage Halcyone5556048.560PaenibacillusGroup I HalcyonevirusHalcyonevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) HalcyonevirusHalcyonevirus halcyoneCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_35
MH460829Acinetobacter phage vB_ApiM_fHyAci0316597536.758AcinetobacterGroup I LazarusvirusLazarusvirusTwarogvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Acinetobacter pittiiHigh-qualityHigh-quality98.900AAI-based (high-confidence) LazarusvirusLazarusvirus fhyacithreeCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH464253Shigella phage SFPH24038752.410ShigellaGroup I KayfunavirusKayfunavirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Shigella flexneriHigh-qualityHigh-quality100.000AAI-based (high-confidence) KayfunavirusKayfunavirus SFPH2The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
MH479909Mycobacterium phage Commander5136963.879MycobacteriumGroup I BackyardiganvirusBackyardiganvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) BackyardiganvirusBackyardiganvirus bellusterraCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_31;immunity orf_64
MH479910Gordonia phage Danyall5869567.757GordoniaGroup I WizardvirusWizardvirusFrickvirinaeStackebrandtviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae 3612High-qualityHigh-quality98.920AAI-based (high-confidence) WizardvirusWizardvirus danyallThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateimmunity orf_23;integrase orf_46;integrase orf_49
MH479911Mycobacterium phage Eapen5136663.889MycobacteriumGroup I BackyardiganvirusBackyardiganvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) BackyardiganvirusBackyardiganvirus peachesCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_31;immunity orf_63
MH479912Gordonia phage Eviarto5340766.549GordoniaGroup I NymphadoravirusNymphadoravirusNymbaxtervirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae 3612High-qualityHigh-quality100.000AAI-based (high-confidence) NymphadoravirusNymphadoravirus nymphadoraThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_35;immunity orf_40;cro orf_41
MH479914Mycobacterium phage FugateOSU6947666.459MycobacteriumGroup I PegunavirusPegunavirusBclasvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) PegunavirusPegunavirus kingtutCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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