INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MH454082	Paenibacillus phage Genki	38540	41.458	Paenibacillus	Group I	Fernvirus	Fernvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paenibacillus larvae	High-quality	High-quality	96.260	AAI-based (high-confidence)	Fernvirus	Fernvirus jacopo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;antirepressor orf_40
MH454083	Paenibacillus phage Saudage	37962	41.873	Paenibacillus	Group I	Fernvirus	Fernvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paenibacillus larvae	High-quality	High-quality	94.710	AAI-based (high-confidence)	Fernvirus	Fernvirus lucielle	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_28;antirepressor orf_33;antirepressor orf_37
MH454084	Paenibacillus phage Toothless	38832	41.978	Paenibacillus	Group I	Fernvirus	Fernvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paenibacillus larvae	High-quality	High-quality	96.890	AAI-based (high-confidence)	Fernvirus	Fernvirus pagassa	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_28;antirepressor orf_33;antirepressor orf_38
MH458951	Bacillus phage vB_BthS_BMBphi	49277	39.708	Bacillus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus thuringiensis	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MH460459	Dickeya phage vB_DsoP_JA10	40131	51.451	Dickeya	Group I	Ningirsuvirus	Ningirsuvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Dickeya solani MK10	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ningirsuvirus	Ningirsuvirus JA10	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH460460	Dickeya phage vB_DsoM_JA13	254061	44.535	Dickeya	Group I	Salmondvirus	Salmondvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Dickeya solani MK10	High-quality	High-quality	99.770	AAI-based (high-confidence)	Salmondvirus	Salmondvirus JA11	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_306
MH460461	Dickeya phage vB_DsoM_JA29	253323	43.843	Dickeya	Group I	Salmondvirus	Salmondvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Dickeya solani MK10	High-quality	High-quality	99.510	AAI-based (high-confidence)	Salmondvirus	Salmondvirus JA29	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_309
MH460462	Dickeya phage vB_DsoM_JA33	255356	44.465	Dickeya	Group I	Salmondvirus	Salmondvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Dickeya solani MK10	High-quality	High-quality	100.000	AAI-based (high-confidence)	Salmondvirus	Salmondvirus JA11	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_309
MH460463	Dickeya phage vB_DsoM_AD1	261658	49.366	Dickeya	Group I	Alexandravirus	Alexandravirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Dickeya solani MK10	High-quality	High-quality	98.760	AAI-based (high-confidence)	Alexandravirus	Alexandravirus AD1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_329
MH460824	Paenibacillus phage Unity	50316	49.110	Paenibacillus	Group I	Halcyonevirus	Halcyonevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paenibacillus larvae	High-quality	High-quality	92.910	AAI-based (high-confidence)	Halcyonevirus	Halcyonevirus unity	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_25