INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MH363708	Escherichia phage C130_2	41775	55.430	Escherichia	Group I	Hungariovirus	Hungariovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterobacteriaceae	Complete	High-quality	100.000	DTR (high-confidence)	Hungariovirus	Hungariovirus C1302	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH370358	Salmonella phage S100	43468	49.565	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serotype Typhimurium LT2	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus S100	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH370359	Salmonella phage S101	42621	49.668	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serotype Typhimurium LT2	High-quality	High-quality	99.510	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus S100	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH370360	Salmonella phage S102	42439	49.655	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serotype Enteritidis P132344	High-quality	High-quality	98.940	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus S102	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH370361	Salmonella phage S103	42441	49.655	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serotype Enteritidis P132344	High-quality	High-quality	98.960	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus S102	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH370362	Salmonella phage S104	43118	49.615	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serotype Enteritidis E2331	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus S102	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH370363	Salmonella phage S106	42976	49.702	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serotype Enteritidis E2331	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus dunkel	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH370364	Salmonella phage S107	49818	48.583	Salmonella	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_38;integrase orf_54;cro orf_60
MH370365	Salmonella phage S111	43421	49.672	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serotype Enteritidis E2331	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus dunkel	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH370366	Salmonella phage S113	112582	39.960	Salmonella	Group I	Epseptimavirus	Epseptimavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serotype Typhimurium SL1344	High-quality	High-quality	99.530	AAI-based (high-confidence)	Epseptimavirus	Epseptimavirus S113	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic