Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
MH341453Listeria phage PSU-VKH-LP0414828635.820ListeriaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria ListeriaHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_40;antirepressor orf_76
MH355583Enterococcus phage vB_EfaS_LM994020335.005EnterococcusGroup I EfquatrovirusEfquatrovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalis strain Ef1High-qualityHigh-quality98.660AAI-based (high-confidence) EfquatrovirusEfquatrovirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH355584Escherichia phage vB_EcoM_JB7516720835.270EscherichiaGroup I TequatrovirusTequatrovirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli 2129975High-qualityHigh-quality99.420AAI-based (high-confidence) TequatrovirusTequatrovirus ecombl75Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH356729Pseudomonas phage LP147308054.982PseudomonasGroup I LitunavirusLitunavirusMigulavirinaeSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality100.000AAI-based (high-confidence) LitunavirusLitunavirus Yh6Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH356730Staphylococcus phage VB-SauS-SA28905531.917StaphylococcusGroup I SextaecvirusSextaecvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus aureusHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
MH358359Salmonella phage vB_SpuS_Sp44361449.491SalmonellaGroup I JerseyvirusJerseyvirusGuernseyvirinaeSarkviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella sp.High-qualityHigh-quality100.000AAI-based (high-confidence) JerseyvirusJerseyvirus LDW16Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH358458Escherichia phage phi G176827043.529EscherichiaGroup I GamaleyavirusGamaleyavirusEnquatrovirinaeSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliCompleteHigh-quality100.000DTR (high-confidence) GamaleyavirusGamaleyavirus G17Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH359124Escherichia phage SF16869537.614EscherichiaGroup I MosigvirusMosigvirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli O157:H7High-qualityHigh-quality99.350AAI-based (high-confidence) MosigvirusMosigvirus sfCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH362766Escherichia phage Halfdan4285853.666EscherichiaGroup I HalfdanvirusHalfdanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli MG1655 K12High-qualityHigh-quality100.000AAI-based (high-confidence) HalfdanvirusHalfdanvirus halfdanCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH363700Vibrio phage VP-115076441.873VibrioGroup I VapseptimavirusVapseptimavirusUnclassifiedAckermannviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio parahaemolyticusHigh-qualityHigh-quality100.000AAI-based (high-confidence) VapseptimavirusVapseptimavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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