INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH271315 | Rhodococcus phage Takoda | 46807 | 58.737 | Rhodococcus | Group I | Rerduovirus | Rerduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus erythropolis RIA 643 | High-quality | High-quality | 99.460 | AAI-based (high-confidence) | Rerduovirus | Rerduovirus takoda | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25;immunity orf_52 |
| MH271316 | Microbacterium phage Tandem | 63128 | 64.703 | Microbacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium paraoxydans NWU1 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MH271317 | Corynebacterium phage TouchMeNot | 40526 | 60.031 | Corynebacterium | Group I | Poushouvirus | Poushouvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Corynebacterium vitaeruminis CAG1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Poushouvirus | Poushouvirus Poushou | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32 |
| MH271318 | Gordonia phage Trine | 43758 | 67.816 | Gordonia | Group I | Trinevirus | Trinevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Trinevirus | Trinevirus trine | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MH271319 | Rhodococcus phage UhSalsa | 46539 | 58.577 | Rhodococcus | Group I | Rerduovirus | Rerduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus erythropolis RIA 643 | High-quality | High-quality | 98.900 | AAI-based (high-confidence) | Rerduovirus | Rerduovirus RER2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25;immunity orf_52 |
| MH271320 | Microbacterium phage Zeta1847 | 47921 | 71.415 | Microbacterium | Group I | Zetavirus | Zetavirus | Unclassified | Casidaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium paraoxydans NWU1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Zetavirus | Zetavirus zeta1847 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_53 |
| MH271321 | Microbacterium phage Quhwah | 53549 | 68.847 | Microbacterium | Group I | Quhwahvirus | Quhwahvirus | Unclassified | Hodgkinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 99.730 | AAI-based (high-confidence) | Quhwahvirus | Quhwahvirus quhwah | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH285980 | Escherichia phage Eco_BIFF | 49372 | 45.258 | Escherichia | Group I | Tunavirus | Tunavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K-12 subsr. MG1655 | High-quality | High-quality | 98.590 | AAI-based (high-confidence) | Tunavirus | Tunavirus BIFF | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH299806 | Listeria phage LP-KV022 | 65128 | 36.338 | Listeria | Group I | Homburgvirus | Homburgvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria | High-quality | High-quality | 96.970 | AAI-based (high-confidence) | Homburgvirus | Homburgvirus LP110 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH310933 | Vibrio phage ICP1_2011_A | 126861 | 37.137 | Vibrio | Group I | Mohonavirus | Mohonavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 94.900 | AAI-based (high-confidence) | Mohonavirus | Mohonavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_86 |