INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH271305 | Gordonia phage Morrissey | 44924 | 65.845 | Gordonia | Group I | Gustavvirus | Gustavvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae NRRL B-16283 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| MH271306 | Rhodococcus phage Nancinator | 45936 | 58.638 | Rhodococcus | Group I | Rerduovirus | Rerduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus erythropolis RIA 643 | High-quality | High-quality | 97.620 | AAI-based (high-confidence) | Rerduovirus | Rerduovirus RER2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25 |
| MH271307 | Microbacterium phage OlinDD | 63123 | 64.601 | Microbacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium paraoxydans NWU1 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MH271308 | Microbacterium phage Percival | 47364 | 69.622 | Microbacterium | Group I | Percivalvirus | Percivalvirus | Unclassified | Casidaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 99.060 | AAI-based (high-confidence) | Percivalvirus | Percivalvirus percival | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH271309 | Rhodococcus phage Phrankenstein | 46540 | 58.573 | Rhodococcus | Group I | Rerduovirus | Rerduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus erythropolis RIA 643 | High-quality | High-quality | 98.910 | AAI-based (high-confidence) | Rerduovirus | Rerduovirus RER2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25 |
| MH271310 | Microbacterium phage Pioneer3 | 62954 | 64.641 | Microbacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium paraoxydans NWU1 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MH271311 | Rhodococcus phage Rasputin | 46568 | 58.798 | Rhodococcus | Group I | Rerduovirus | Rerduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus erythropolis RIA 643 | High-quality | High-quality | 98.960 | AAI-based (high-confidence) | Rerduovirus | Rerduovirus RER2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25 |
| MH271312 | Microbacterium phage RobsFeet | 54189 | 68.602 | Microbacterium | Group I | Metamorphoovirus | Metamorphoovirus | Unclassified | Hodgkinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium paraoxydans NWU1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Metamorphoovirus | Metamorphoovirus robsfeet | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH271313 | Gordonia phage Suzy | 67118 | 59.094 | Gordonia | Group I | Terapinvirus | Terapinvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Terapinvirus | Terapinvirus suzy | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH271314 | Rhodococcus phage Swann | 46596 | 58.614 | Rhodococcus | Group I | Rerduovirus | Rerduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus erythropolis RIA 643 | High-quality | High-quality | 99.020 | AAI-based (high-confidence) | Rerduovirus | Rerduovirus RER2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25;immunity orf_53 |