INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MG711465	Faecalibacterium phage FP_Brigit	61716	55.796	Faecalibacterium	Group I	Brigitvirus	Brigitvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Faecalibacterium prausnitzii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Brigitvirus	Brigitvirus brigit	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1;antirepressor orf_35
MG711466	Faecalibacterium phage FP_Toutatis	54725	53.906	Faecalibacterium	Group I	Toutatisvirus	Toutatisvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Faecalibacterium prausnitzii	High-quality	High-quality	99.570	AAI-based (high-confidence)	Toutatisvirus	Toutatisvirus toutatis	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1
MG711467	Faecalibacterium phage FP_Taranis	54286	55.799	Faecalibacterium	Group I	Taranisvirus	Taranisvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Faecalibacterium prausnitzii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Taranisvirus	Taranisvirus taranis	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1
MG711516	Ralstonia phage RsoP1EGY	41297	58.970	Ralstonia	Group I	Gyeongsanvirus	Gyeongsanvirus	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Ralstonia solanacearum	High-quality	High-quality	100.000	AAI-based (high-confidence)	Gyeongsanvirus	Gyeongsanvirus RsoP1EGY	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_21
MG720308	Vibrio phage Aphrodite1	237722	43.360	Vibrio	Group I	Aphroditevirus	Aphroditevirus	Gorgonvirinae	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio alginolyticus V1	Complete	High-quality	100.000	DTR (high-confidence)	Aphroditevirus	Aphroditevirus aphrodite1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG720309	Vibrio phage Ares1	80500	45.075	Vibrio	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio alginolyticus	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MG721208	Staphylococcus phage vB_SauM_LM12	143652	30.247	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kayvirus	Kayvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG727695	Paenibacillus phage BN12	39485	42.560	Paenibacillus	Group I	Fernvirus	Fernvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paenibacillus larvae	High-quality	High-quality	98.520	AAI-based (high-confidence)	Fernvirus	Fernvirus BN12	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;antirepressor orf_36;antirepressor orf_41
MG727696	Paenibacillus phage Kiel007	37985	41.811	Paenibacillus	Group I	Fernvirus	Fernvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paenibacillus larvae	High-quality	High-quality	94.870	AAI-based (high-confidence)	Fernvirus	Fernvirus rani	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_26;integrase orf_27;antirepressor orf_30;antirepressor orf_32;antirepressor orf_36
MG727697	Paenibacillus phage Dragolir	41131	43.981	Paenibacillus	Group I	Dragolirvirus	Dragolirvirus	Gochnauervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paenibacillus larvae	High-quality	High-quality	97.350	AAI-based (high-confidence)	Dragolirvirus	Dragolirvirus dragolir	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;antirepressor orf_35