INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CP025923 | Escherichia phage 520873 | 37583 | 52.005 | Escherichia | Group I | Xuanwuvirus | Xuanwuvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 520873 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Xuanwuvirus | Xuanwuvirus xv520873 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| CP027117 | Bacillus phage EZ-2018a | 118485 | 39.900 | Bacillus | Group I | Jenstvirus | Jenstvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus pumilus strain 145 | High-quality | High-quality | 91.880 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_9 |
| CP038007 | Klebsiella phage 020009 | 55032 | 52.686 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae SCKP020009 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | parA orf_55 |
| CP045566 | Liberibacter phage CLasMV1 | 8869 | 36.791 | Liberibacter | Group II | Largivirus | Largivirus | Unclassified | Liberviridae | Amoyvirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Candidatus Liberibacter asiaticus strain GDHZ11D | Low-quality | Genome-fragment | 26.560 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| CP051272 | Salmonella phage SW-70 | 42381 | 47.200 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Worthington OLF-FSR1_WB_Quail_SW-70 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lederbergvirus | Lederbergvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_11;antirepressor orf_45 |
| CP051275 | Salmonella phage SW-37 | 41358 | 49.911 | Salmonella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Worthington OLF-FSR1_WB_Partridge_SW-37 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_12;cro orf_27 |
| CP051278 | Salmonella phage ST-87 | 40825 | 46.952 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium OLF-FSR1_WB_Sparrow_ST-87 | High-quality | High-quality | 99.440 | AAI-based (medium-confidence) | Lederbergvirus | Lederbergvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_20;integrase orf_21;antirepressor orf_43 |
| CP051279 | Salmonella phage ST-35 | 39033 | 46.922 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium OLF-FSR1_WB_Junco_ST-35 | High-quality | High-quality | 95.100 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_22;integrase orf_31;cro orf_38 |
| CP051285 | Salmonella phage ST-32 | 40826 | 46.960 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium OLF-FSR1_WB_Gull_ST-32 | High-quality | High-quality | 99.670 | AAI-based (high-confidence) | Lederbergvirus | Lederbergvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_22;integrase orf_36;antirepressor orf_45 |
| CP051288 | Salmonella phage ST-29 | 40874 | 47.032 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium OLF-FSR1_WB_Gull_ST-29 | High-quality | High-quality | 99.700 | AAI-based (high-confidence) | Lederbergvirus | Lederbergvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_44;integrase orf_58;antirepressor orf_71 |