INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CP017838 | Proteobacteria phage MWH-Nonnen-W8red 1 | 43334 | 33.092 | Unspecified | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Silvanigrella aquatica Nonnen-W8red | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_51 |
| CP017905 | Vibrio phage K05K4_VK05K4_1 | 21012 | 46.354 | Vibrio | Group II | Inoviridae | Unclassified | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio alginolyticus K05K4 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | cro orf_2 |
| CP017906 | Vibrio phage K05K4_VK05K4_2 | 13327 | 46.350 | Vibrio | Group II | Inoviridae | Unclassified | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio alginolyticus K05K4 | Medium-quality | Genome-fragment | 84.080 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| CP018841 | Staphylococcus phage HOB 14.1.R1 | 18659 | 32.885 | Staphylococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis 14.1.R1 | Low-quality | Genome-fragment | 42.890 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_21 |
| CP019719 | Paenibacillus phage phiERICV | 45618 | 42.115 | Paenibacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae subsp. larvae strain Eric_V | Medium-quality | Genome-fragment | 84.210 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;antirepressor orf_5 |
| CP025874 | Escherichia phage 503458 | 31194 | 53.446 | Escherichia | Group I | Xuanwuvirus | Xuanwuvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 503458 | Medium-quality | Genome-fragment | 86.460 | AAI-based (high-confidence) | Xuanwuvirus | Xuanwuvirus xv503458 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_44 |
| CP025900 | Escherichia phage 500465-1 | 39179 | 52.651 | Escherichia | Group I | Wadgaonvirus | Wadgaonvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 500465 | Medium-quality | Genome-fragment | 80.870 | AAI-based (high-confidence) | Wadgaonvirus | Wadgaonvirus wv5004651 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| CP025901 | Escherichia phage 500465-2 | 33041 | 52.441 | Escherichia | Group I | Gemsvirus | Gemsvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 500465 | Medium-quality | Genome-fragment | 69.380 | AAI-based (high-confidence) | Gemsvirus | Gemsvirus gv5004652 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_40 |
| CP025902 | Escherichia phage 500465-3 | 13549 | 55.023 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 500465 | Low-quality | Genome-fragment | 27.960 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| CP025907 | Escherichia phage 204576 | 31521 | 52.378 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 204576 | Medium-quality | Genome-fragment | 64.580 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_34 |