INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MF324915 | Mycobacterium phage Amgine | 62236 | 66.447 | Mycobacterium | Group I | Amginevirus | Amginevirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Amginevirus | Amginevirus amgine | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_37;immunity orf_39;cro orf_40 |
| MF327003 | Shigella phage Sf14 | 87575 | 39.065 | Shigella | Group I | Mooglevirus | Mooglevirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri | High-quality | High-quality | 99.420 | AAI-based (high-confidence) | Mooglevirus | Mooglevirus Sf14 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MF327004 | Shigella phage Sf17 | 90092 | 39.032 | Shigella | Group I | Mooglevirus | Mooglevirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella boydii; Shigella flexneri | Complete | High-quality | 100.000 | DTR (high-confidence) | Mooglevirus | Mooglevirus Sf17 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MF327005 | Shigella phage Sf19 | 90375 | 39.024 | Shigella | Group I | Mooglevirus | Mooglevirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Mooglevirus | Mooglevirus Sf17 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MF327006 | Shigella phage Sf20 | 163982 | 40.564 | Shigella | Group I | Krischvirus | Krischvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella boydii; Shigella flexneri | High-quality | High-quality | 98.420 | AAI-based (high-confidence) | Krischvirus | Krischvirus RB49 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF327007 | Shigella phage Sf21 | 166002 | 35.451 | Shigella | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri; Shigella sonnei; Escherichia coli K12 | High-quality | High-quality | 98.680 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus sf21 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF327008 | Shigella phage Sf24 | 168112 | 35.321 | Shigella | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus sf24 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF327009 | Shigella phage Sf25 | 168573 | 35.346 | Shigella | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri; Shigella sonnei; Escherichia coli K12 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus sf24 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF346584 | Acinetobacter phage AbP2 | 45373 | 37.837 | Acinetobacter | Group I | Burnvirus | Burnvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii AB2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Burnvirus | Burnvirus AbP2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MF346933 | Lactococcus phage vB_Llc_bIBBF14 | 29837 | 34.739 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis IL1403 | High-quality | High-quality | 98.290 | AAI-based (high-confidence) | Skunavirus | Skunavirus bibb29 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |