INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MF324905 | Rhodococcus phage Alatin | 46673 | 58.651 | Rhodococcus | Group I | Rerduovirus | Rerduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus erythropolis RIA 643 | High-quality | High-quality | 99.180 | AAI-based (high-confidence) | Rerduovirus | Rerduovirus RER2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25;immunity orf_53 |
| MF324906 | Arthrobacter phage Cheesy | 58739 | 45.248 | Arthrobacter | Group I | Mudcatvirus | Mudcatvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Mudcatvirus | Mudcatvirus cheesy | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF324907 | Arthrobacter phage Beans | 49797 | 63.566 | Arthrobacter | Group I | Jawnskivirus | Jawnskivirus | Unclassified | Berryhillviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 98.930 | AAI-based (high-confidence) | Jawnskivirus | Jawnskivirus beans | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF324908 | Mycobacterium phage Unicorn | 61208 | 66.184 | Mycobacterium | Group I | Unicornvirus | Unicornvirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.900 | AAI-based (high-confidence) | Unicornvirus | Unicornvirus unicorn | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_40;immunity orf_43;cro orf_44 |
| MF324909 | Mycobacterium phage PhelpsODU | 56580 | 66.099 | Mycobacterium | Group I | Unicornvirus | Unicornvirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 92.340 | AAI-based (high-confidence) | Unicornvirus | Unicornvirus unicorn | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_40;immunity orf_43;cro orf_44 |
| MF324910 | Mycobacterium phage GuuelaD | 76315 | 58.889 | Mycobacterium | Group I | Faithunavirus | Faithunavirus | Lclasvirinae | Vilmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Faithunavirus | Faithunavirus guuelaD | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_39;immunity orf_41;cro orf_42 |
| MF324911 | Mycobacterium phage SirPhilip | 61882 | 66.701 | Mycobacterium | Group I | Anayavirus | Anayavirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Anayavirus | Anayavirus sirphilip | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_39;immunity orf_42 |
| MF324912 | Mycobacterium phage Phrank | 61109 | 66.246 | Mycobacterium | Group I | Unicornvirus | Unicornvirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.730 | AAI-based (high-confidence) | Unicornvirus | Unicornvirus bryler | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_40;immunity orf_43;cro orf_44 |
| MF324913 | Mycobacterium phage Cain | 60813 | 66.270 | Mycobacterium | Group I | Unicornvirus | Unicornvirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.240 | AAI-based (high-confidence) | Unicornvirus | Unicornvirus bryler | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_40;immunity orf_43;cro orf_44 |
| MF324914 | Mycobacterium phage Krueger | 60321 | 66.541 | Mycobacterium | Group I | Unicornvirus | Unicornvirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.460 | AAI-based (high-confidence) | Unicornvirus | Unicornvirus krueger | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_44;immunity orf_47;cro orf_48 |