INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LT714109 | Lederbergvirus BTP1 | 40525 | 47.450 | Unspecified | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.070 | AAI-based (high-confidence) | Lederbergvirus | Lederbergvirus BTP1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_16;antirepressor orf_36;antirepressor orf_54;integrase orf_57 |
| LT841304 | Escherichia phage vB_EcoS_swan01 | 50865 | 44.740 | Escherichia | Group I | Warwickvirus | Warwickvirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | Warwickvirus | Warwickvirus swan01 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LT898437 | Emesvirus zinderi | 3534 | 52.094 | Unspecified | Group IV | Emesvirus | Emesvirus | Unclassified | Fiersviridae | Norzivirales | Leviviricetes | Lenarviricota | Orthornavirae | Riboviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| LT907986 | Escherichia phage vB_Eco_SLUR25 | 58998 | 44.778 | Escherichia | Group I | Seuratvirus | Seuratvirus | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Seuratvirus | Seuratvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LT960551 | Yersinia phage fHe-Yen9-04 | 354378 | 31.646 | Yersinia | Group I | Eneladusvirus | Eneladusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.270 | AAI-based (high-confidence) | Eneladusvirus | Eneladusvirus Yen904 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| LT960552 | Yersinia phage fHe-Yen9-03 | 352596 | 31.681 | Yersinia | Group I | Eneladusvirus | Eneladusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.740 | AAI-based (high-confidence) | Eneladusvirus | Eneladusvirus Yen904 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| LT960606 | Yersinia phage fPS-9 | 39034 | 45.604 | Yersinia | Group I | Helsettvirus | Helsettvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Helsettvirus | Helsettvirus fPS9 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LT960607 | Escherichia phage SECphi17 | 5538 | 46.009 | Escherichia | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Escherichia coli MG1655 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| LT960608 | Bacillus phage SBSphiJ | 156875 | 42.132 | Bacillus | Group I | Nitunavirus | Nitunavirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis BEST7003 | Complete | High-quality | 100.000 | DTR (high-confidence) | Nitunavirus | Nitunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LT960609 | Escherichia phage SECphi18 | 44798 | 54.804 | Escherichia | Group I | Dhillonvirus | Dhillonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli MG1655 | Complete | High-quality | 100.000 | DTR (high-confidence) | Dhillonvirus | Dhillonvirus SECphi18 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |