INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LT594300 | Escherichia phage LM33_P1 | 38979 | 50.186 | Escherichia | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli strain LM33 | High-quality | High-quality | 98.000 | AAI-based (high-confidence) | Kayfunavirus | Kayfunavirus LM33P1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| LT598654 | Phage NCTB | 257877 | 42.009 | Unspecified | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_94;integrase orf_236 |
| LT600745 | Clostridium phage HM2 | 17470 | 29.399 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| LT603033 | Escherichia phage vB_Eco_slurp01 | 348043 | 34.052 | Escherichia | Group I | Asteriusvirus | Asteriusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Swine | High-quality | High-quality | 92.370 | AAI-based (high-confidence) | Asteriusvirus | Asteriusvirus PBECO4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LT603684 | Pseudomonas phage phiC725A | 64149 | 63.452 | Pseudomonas | Group I | Hollowayvirus | Hollowayvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.660 | AAI-based (high-confidence) | Hollowayvirus | Hollowayvirus phiC725A | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_66 |
| LT607758 | Klebsiella phage PMBT1 | 175206 | 41.882 | Klebsiella | Group I | Slopekvirus | Slopekvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.340 | AAI-based (high-confidence) | Slopekvirus | Slopekvirus kp15 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LT608331 | Pseudomonas phage vB_PaeS_PcyII-40_PfII40a | 37033 | 64.343 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.390 | AAI-based (high-confidence) | Casadabanvirus | Casadabanvirus PfII40a | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_1 |
| LT614807 | Cronobacter phage Pet-CM3-4 | 171975 | 39.806 | Cronobacter | Group I | Karamvirus | Karamvirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter malonaticus LMG 23826 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Karamvirus | Karamvirus petcm34 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LT615366 | Enterococcus phage VPE25 | 86524 | 30.342 | Enterococcus | Group I | Andrewesvirinae | Unclassified | Andrewesvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Vipetofemvirus | Vipetofemvirus vipetofem | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LT630001 | Enterococcus phage Idefix | 18168 | 33.201 | Enterococcus | Group I | Copernicusvirus | Copernicusvirus | Sarlesvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | ITR (high-confidence) | Copernicusvirus | Copernicusvirus Idefix | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |