INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LR597642 | Escherichia phage Evi | 40019 | 50.556 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Medium-quality | Genome-fragment | 87.050 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_44 |
| LR597643 | Escherichia phage ev017 | 50126 | 49.689 | Escherichia | Group I | Jouyvirus | Jouyvirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Jouyvirus | Jouyvirus ev017 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_31;cro orf_55;cro orf_56 |
| LR597644 | Escherichia phage Lambda_ev087 | 46710 | 50.032 | Escherichia | Group I | Jouyvirus | Jouyvirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.950 | AAI-based (high-confidence) | Jouyvirus | Jouyvirus jv1H12 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_31;cro orf_47;cro orf_48 |
| LR597645 | Escherichia phage Fraca | 43664 | 51.599 | Escherichia | Group I | Hendrixvirinae | Unclassified | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_28;antirepressor orf_31 |
| LR597646 | Escherichia phage Gluttony_ev152 | 44825 | 54.608 | Escherichia | Group I | Dhillonvirus | Dhillonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dhillonvirus | Dhillonvirus gluttonyev152 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LR597647 | Escherichia phage rV5_ev147 | 136384 | 43.653 | Escherichia | Group I | Vequintavirus | Vequintavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.250 | AAI-based (high-confidence) | Vequintavirus | Vequintavirus slur16 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LR597648 | Escherichia phage Lambda_ev245 | 46704 | 50.030 | Escherichia | Group I | Jouyvirus | Jouyvirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.940 | AAI-based (high-confidence) | Jouyvirus | Jouyvirus jv1H12 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_31;cro orf_47;cro orf_48 |
| LR597649 | Escherichia phage ESSI2_ev015 | 30584 | 50.876 | Escherichia | Group I | Quadragintavirus | Quadragintavirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Quadragintavirus | Quadragintavirus ev015 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_38 |
| LR597650 | Escherichia phage Lambda_ev203 | 46680 | 50.030 | Escherichia | Group I | Jouyvirus | Jouyvirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.890 | AAI-based (high-confidence) | Jouyvirus | Jouyvirus jv1H12 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_31;cro orf_47;cro orf_48 |
| LR597651 | Escherichia phage Lambda_ev058 | 47678 | 49.927 | Escherichia | Group I | Jouyvirus | Jouyvirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Jouyvirus | Jouyvirus jv1H12 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_31;cro orf_47;cro orf_48 |