INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LR596615 | Yersinia phage fHe-Yen9-04 | 354378 | 31.646 | Yersinia | Group I | Eneladusvirus | Eneladusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.270 | AAI-based (high-confidence) | Eneladusvirus | Eneladusvirus Yen904 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| LR596902 | Roseburia phage Jekyll | 45629 | 40.906 | Roseburia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Medium-quality | Genome-fragment | 88.890 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| LR596903 | Roseburia phage Shimadzu | 44991 | 52.068 | Roseburia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.050 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| LR597635 | Escherichia phage ev099 | 47224 | 50.430 | Escherichia | Group I | Radostvirus | Radostvirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Radostvirus | Radostvirus ev099 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_28;cro orf_44;cro orf_45 |
| LR597636 | Escherichia phage ev207 | 46685 | 50.288 | Escherichia | Group I | Jouyvirus | Jouyvirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Jouyvirus | Jouyvirus ev207 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_31;cro orf_47;cro orf_48 |
| LR597637 | Escherichia phage ESSI2_ev239 | 29203 | 51.378 | Escherichia | Group I | Evevirus | Evevirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 96.730 | AAI-based (high-confidence) | Evevirus | Evevirus ev239 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_34 |
| LR597638 | Escherichia phage ESSI2_ev040 | 30597 | 50.822 | Escherichia | Group I | Quadragintavirus | Quadragintavirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Quadragintavirus | Quadragintavirus ev040 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_38 |
| LR597639 | Escherichia phage ev243 | 45560 | 50.316 | Escherichia | Group I | Nesevirus | Nesevirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.850 | AAI-based (high-confidence) | Nesevirus | Nesevirus ev243 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_29;cro orf_46;cro orf_47 |
| LR597640 | Escherichia phage ESSI2_ev129 | 30927 | 51.483 | Escherichia | Group I | Quadragintavirus | Quadragintavirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Quadragintavirus | Quadragintavirus ev129 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_39 |
| LR597641 | Escherichia phage mEp460_ev081 | 45865 | 49.340 | Escherichia | Group I | Vilvertvirus | Vilvertvirus | Wollmanvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.780 | AAI-based (high-confidence) | Vilvertvirus | Vilvertvirus mEp460ev081 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_24 |