INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KY940711 | Bradyrhizobium phage BDU-MI-1 | 121342 | 61.645 | Bradyrhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bradyrhizobium diazoefficiens USDA110 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_70 |
| KY942056 | Dickeya phage JA15 | 153757 | 49.200 | Dickeya | Group I | Limestonevirus | Limestonevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya solani | High-quality | High-quality | 97.370 | AAI-based (high-confidence) | Limestonevirus | Limestonevirus limestone | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KY942057 | Dickeya phage XF4 | 151519 | 49.382 | Dickeya | Group I | Limestonevirus | Limestonevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya solani | High-quality | High-quality | 95.960 | AAI-based (high-confidence) | Limestonevirus | Limestonevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KY945241 | Synechococcus phage S-H35 | 174231 | 41.188 | Synechococcus | Group I | Shandvirus | Shandvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH8102 | High-quality | High-quality | 99.830 | AAI-based (high-confidence) | Shandvirus | Shandvirus sh35 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_134 |
| KY945355 | Mycobacterium phage Shandong1 | 60618 | 67.460 | Mycobacterium | Group I | Unicornvirus | Unicornvirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.920 | AAI-based (high-confidence) | Unicornvirus | Unicornvirus shandong1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_45;immunity orf_47 |
| KY947509 | Bacillus phage SerPounce | 27206 | 30.431 | Bacillus | Group I | Claudivirus | Claudivirus | Northropvirinae | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis subsp. kurstaki ATCC 33679 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Claudivirus | Claudivirus serpounce | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY951963 | Flavobacterium phage FCV-3 | 46496 | 29.826 | Flavobacterium | Group I | Ficleduovirus | Ficleduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Flavobacterium columnare | High-quality | High-quality | 96.460 | AAI-based (high-confidence) | Ficleduovirus | Ficleduovirus FCV1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY951964 | Flavobacterium phage FCV-11 | 46481 | 29.825 | Flavobacterium | Group I | Ficleduovirus | Ficleduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Flavobacterium columnare | High-quality | High-quality | 96.420 | AAI-based (high-confidence) | Ficleduovirus | Ficleduovirus FCV1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY953156 | Pectobacterium phage vB_PatP_CB5 | 44549 | 48.984 | Pectobacterium | Group I | Phimunavirus | Phimunavirus | Corkvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium atrosepticum DSM 30186 | Complete | High-quality | 100.000 | DTR (high-confidence) | Phimunavirus | Phimunavirus CB5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY962008 | Escherichia phage ST31 | 39693 | 49.989 | Escherichia | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli ST130 | High-quality | High-quality | 99.780 | AAI-based (high-confidence) | Kayfunavirus | Kayfunavirus ST31 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |