Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KY565347Geobacillus phage TP-844771845.547GeobacillusGroup I SaundersvirusSaundersvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Geobacillus stearothermophilus 2184High-qualityHigh-quality100.000AAI-based (high-confidence) SaundersvirusSaundersvirus Tp84Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KY566218Corynebacterium phage LGCM-VI3667151.046CorynebacteriumGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Corynebacterium pseudotuberculosis 31High-qualityHigh-quality99.990AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_3;antirepressor orf_16
KY575286Klebsiella phage SH-Kp 1600164917050.504KlebsiellaGroup I WebervirusWebervirusUnclassifiedDrexlerviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeHigh-qualityHigh-quality99.240AAI-based (high-confidence) WebervirusWebervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KY579375Sulfolobus spindle-shaped virus 31523038.234SulfolobusUnclassified AlphafusellovirusAlphafusellovirusUnclassifiedFuselloviridaeUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Sulfolobus sp.High-qualityHigh-quality97.230AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_7
KY581279Staphylococcus phage pSa-313783630.405StaphylococcusGroup I KayvirusKayvirusTwortvirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus aureus ATCC 25923High-qualityHigh-quality97.340AAI-based (high-confidence) KayvirusKayvirus G1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KY593455Yersinia phage fHe-Yen9-0116777334.791YersiniaGroup I TegunavirusTegunavirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Yersinia enterocolitica serotype O:9 strain Ruokola/71High-qualityHigh-quality99.710AAI-based (high-confidence) TegunavirusTegunavirus fheyen901Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KY606587Dinoroseobacter phage vB_DshS-R5C7787461.546DinoroseobacterGroup I NanhaivirusNanhaivirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Dinoroseobacter shibae DFL12THigh-qualityHigh-quality100.000AAI-based (high-confidence) NanhaivirusNanhaivirus D5CCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KY608967Escherichia phage HP316818835.373EscherichiaGroup I TequatrovirusTequatrovirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli CP9High-qualityHigh-quality100.000AAI-based (high-confidence) TequatrovirusTequatrovirus CF2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KY612839Vibrio phage pVco-57432538.716VibrioGroup I VicoquintavirusVicoquintavirusGaffkyvirinaeSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio corallilyticusHigh-qualityHigh-quality100.000AAI-based (high-confidence) VicoquintavirusVicoquintavirus Pvco5Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KY613597Corynebacterium phage LGCM-V23667151.046CorynebacteriumGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Corynebacterium pseudotuberculosis biovar Equi 32High-qualityHigh-quality99.990AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_3;antirepressor orf_16
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