INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KY565347 | Geobacillus phage TP-84 | 47718 | 45.547 | Geobacillus | Group I | Saundersvirus | Saundersvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Geobacillus stearothermophilus 2184 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Saundersvirus | Saundersvirus Tp84 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY566218 | Corynebacterium phage LGCM-VI | 36671 | 51.046 | Corynebacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Corynebacterium pseudotuberculosis 31 | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_3;antirepressor orf_16 |
| KY575286 | Klebsiella phage SH-Kp 160016 | 49170 | 50.504 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 99.240 | AAI-based (high-confidence) | Webervirus | Webervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY579375 | Sulfolobus spindle-shaped virus 3 | 15230 | 38.234 | Sulfolobus | Unclassified | Alphafusellovirus | Alphafusellovirus | Unclassified | Fuselloviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Sulfolobus sp. | High-quality | High-quality | 97.230 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_7 |
| KY581279 | Staphylococcus phage pSa-3 | 137836 | 30.405 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus ATCC 25923 | High-quality | High-quality | 97.340 | AAI-based (high-confidence) | Kayvirus | Kayvirus G1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY593455 | Yersinia phage fHe-Yen9-01 | 167773 | 34.791 | Yersinia | Group I | Tegunavirus | Tegunavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia enterocolitica serotype O:9 strain Ruokola/71 | High-quality | High-quality | 99.710 | AAI-based (high-confidence) | Tegunavirus | Tegunavirus fheyen901 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY606587 | Dinoroseobacter phage vB_DshS-R5C | 77874 | 61.546 | Dinoroseobacter | Group I | Nanhaivirus | Nanhaivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dinoroseobacter shibae DFL12T | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nanhaivirus | Nanhaivirus D5C | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY608967 | Escherichia phage HP3 | 168188 | 35.373 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli CP9 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus CF2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY612839 | Vibrio phage pVco-5 | 74325 | 38.716 | Vibrio | Group I | Vicoquintavirus | Vicoquintavirus | Gaffkyvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio corallilyticus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Vicoquintavirus | Vicoquintavirus Pvco5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY613597 | Corynebacterium phage LGCM-V2 | 36671 | 51.046 | Corynebacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Corynebacterium pseudotuberculosis biovar Equi 32 | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_3;antirepressor orf_16 |