INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KY554775 | Lactococcus phage AM11 | 126161 | 32.546 | Lactococcus | Group I | Audreyjarvisvirus | Audreyjarvisvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 99.760 | AAI-based (high-confidence) | Audreyjarvisvirus | Audreyjarvisvirus AM1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;integrase orf_155 |
| KY554776 | Lactococcus phage AM12 | 125842 | 32.556 | Lactococcus | Group I | Audreyjarvisvirus | Audreyjarvisvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 99.500 | AAI-based (high-confidence) | Audreyjarvisvirus | Audreyjarvisvirus AM1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;integrase orf_155 |
| KY554777 | Lactococcus phage LW81 | 128179 | 32.570 | Lactococcus | Group I | Audreyjarvisvirus | Audreyjarvisvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Audreyjarvisvirus | Audreyjarvisvirus LW81 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;integrase orf_154 |
| KY555142 | Caulobacter phage Ccr10 | 219348 | 66.124 | Caulobacter | Group I | Shapirovirus | Shapirovirus | Unclassified | Jeanschmidtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter crescentus NA1000 | Complete | High-quality | 100.000 | DTR (high-confidence) | Shapirovirus | Shapirovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_10;integrase orf_140;cro orf_221;integrase orf_333 |
| KY555143 | Caulobacter phage Ccr2 | 220299 | 66.129 | Caulobacter | Group I | Shapirovirus | Shapirovirus | Unclassified | Jeanschmidtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter crescentus NA1000 | Complete | High-quality | 100.000 | DTR (high-confidence) | Shapirovirus | Shapirovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_11;integrase orf_139;cro orf_220;integrase orf_333 |
| KY555144 | Caulobacter phage Ccr5 | 218729 | 66.225 | Caulobacter | Group I | Shapirovirus | Shapirovirus | Unclassified | Jeanschmidtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter crescentus NA1000 | Complete | High-quality | 100.000 | DTR (high-confidence) | Shapirovirus | Shapirovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_8;integrase orf_138;integrase orf_188;cro orf_218;integrase orf_326 |
| KY555145 | Caulobacter phage Ccr29 | 229319 | 66.161 | Caulobacter | Group I | Shapirovirus | Shapirovirus | Unclassified | Jeanschmidtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter crescentus NA1000 | Complete | High-quality | 100.000 | DTR (high-confidence) | Shapirovirus | Shapirovirus cbk | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_10;integrase orf_146;cro orf_230;integrase orf_346 |
| KY555146 | Caulobacter phage Ccr32 | 215799 | 66.160 | Caulobacter | Group I | Shapirovirus | Shapirovirus | Unclassified | Jeanschmidtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter crescentus NA1000 | Complete | High-quality | 100.000 | DTR (high-confidence) | Shapirovirus | Shapirovirus cbk | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_8;integrase orf_141;cro orf_214;integrase orf_323 |
| KY555147 | Caulobacter phage Ccr34 | 216240 | 66.152 | Caulobacter | Group I | Shapirovirus | Shapirovirus | Unclassified | Jeanschmidtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter crescentus NA1000 | Complete | High-quality | 100.000 | DTR (high-confidence) | Shapirovirus | Shapirovirus cbk | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_8;integrase orf_145;cro orf_218;integrase orf_327 |
| KY563228 | Sulfolobus spindle-shaped virus Lassen | 16271 | 37.078 | Sulfolobus | Unclassified | Alphafusellovirus | Alphafusellovirus | Unclassified | Fuselloviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Sulfolobus sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |