Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KY065486Streptococcus phage IPP464023241.241StreptococcusGroup I HinxtonvirusHinxtonvirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 670High-qualityHigh-quality97.160AAI-based (high-confidence) HinxtonvirusHinxtonvirus IPP46The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_1;cro orf_4;antirepressor orf_13
KY065487Streptococcus phage IPP483784838.528StreptococcusGroup I PaclarkvirusPaclarkvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae ST556High-qualityHigh-quality97.820AAI-based (high-confidence) PaclarkvirusPaclarkvirus IPP48Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;cro orf_4;cro orf_5;antirepressor orf_6
KY065488Streptococcus phage IPP504028439.805StreptococcusGroup I SpinunavirusSpinunavirusFerrettivirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 12F/3High-qualityHigh-quality96.130AAI-based (high-confidence) SpinunavirusSpinunavirus IPP50Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;cro orf_3;cro orf_9
KY065489Streptococcus phage IPP513279339.039StreptococcusGroup I AdrianbuildvirusAdrianbuildvirusMcshanvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 6AHigh-qualityHigh-quality97.300AAI-based (high-confidence) AdrianbuildvirusAdrianbuildvirus IPP51The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_1;antirepressor orf_7;integrase orf_26
KY065490Streptococcus phage IPP523680538.150StreptococcusGroup I PaclarkvirusPaclarkvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 34/3High-qualityHigh-quality95.110AAI-based (high-confidence) PaclarkvirusPaclarkvirus IPP52Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1
KY065491Streptococcus phage IPP533723538.273StreptococcusGroup I PaclarkvirusPaclarkvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae GA41538High-qualityHigh-quality96.310AAI-based (high-confidence) PaclarkvirusPaclarkvirus IPP48Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;cro orf_5;cro orf_6;antirepressor orf_7
KY065492Streptococcus phage IPP543890038.375StreptococcusGroup I PaclarkvirusPaclarkvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 32F/2High-qualityHigh-quality100.000AAI-based (high-confidence) PaclarkvirusPaclarkvirus IPP54Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;cro orf_4;cro orf_5;antirepressor orf_6
KY065493Streptococcus phage IPP553784738.706StreptococcusGroup I PaclarkvirusPaclarkvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae 47A/1High-qualityHigh-quality97.800AAI-based (high-confidence) PaclarkvirusPaclarkvirus IPP55Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;antirepressor orf_6
KY065494Streptococcus phage IPP573308440.186StreptococcusGroup I MedawarvirusMedawarvirusMcshanvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae Sp02-1198High-qualityHigh-quality95.370AAI-based (high-confidence) MedawarvirusMedawarvirus IPP57Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;cro orf_4;antirepressor orf_12;integrase orf_27
KY065495Streptococcus phage IPP583202740.076StreptococcusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae GA07228High-qualityHigh-quality93.080AAI-based (high-confidence) MedawarvirusMedawarvirus IPP57Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;cro orf_4;antirepressor orf_12;integrase orf_27
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