INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KY065476 | Streptococcus phage IPP36 | 40781 | 40.190 | Streptococcus | Group I | Spinunavirus | Spinunavirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 22F/2 | High-quality | High-quality | 97.400 | AAI-based (high-confidence) | Spinunavirus | Spinunavirus IPP36 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1 |
| KY065477 | Streptococcus phage IPP37 | 39221 | 40.139 | Streptococcus | Group I | Spinunavirus | Spinunavirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae USA22 | High-quality | High-quality | 93.690 | AAI-based (high-confidence) | Spinunavirus | Spinunavirus IPP37 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_5 |
| KY065478 | Streptococcus phage IPP38 | 40403 | 39.972 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae GA47373 | High-quality | High-quality | 95.950 | AAI-based (high-confidence) | Spinunavirus | Spinunavirus Spn1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_3 |
| KY065479 | Streptococcus phage IPP39 | 37761 | 38.362 | Streptococcus | Group I | Paclarkvirus | Paclarkvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 19A | High-quality | High-quality | 97.600 | AAI-based (high-confidence) | Paclarkvirus | Paclarkvirus IPP39 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;antirepressor orf_5 |
| KY065480 | Streptococcus phage IPP40 | 40449 | 40.041 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae Ala243 | High-quality | High-quality | 95.600 | AAI-based (high-confidence) | Spinunavirus | Spinunavirus Spn1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_3;cro orf_8 |
| KY065481 | Streptococcus phage IPP41 | 34915 | 39.562 | Streptococcus | Group I | Adrianbuildvirus | Adrianbuildvirus | Mcshanvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 23F/10 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Adrianbuildvirus | Adrianbuildvirus IPP41 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_4;antirepressor orf_9;integrase orf_26 |
| KY065482 | Streptococcus phage IPP42 | 35061 | 39.331 | Streptococcus | Group I | Adrianbuildvirus | Adrianbuildvirus | Mcshanvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae AP200 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Adrianbuildvirus | Adrianbuildvirus IPP42 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_19;cro orf_20;integrase orf_22 |
| KY065483 | Streptococcus phage IPP43 | 33032 | 39.132 | Streptococcus | Group I | Adrianbuildvirus | Adrianbuildvirus | Mcshanvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 44/3 | High-quality | High-quality | 99.070 | AAI-based (high-confidence) | Adrianbuildvirus | Adrianbuildvirus IPP43 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_6;antirepressor orf_11;cro orf_25;integrase orf_27 |
| KY065484 | Streptococcus phage IPP44 | 30572 | 38.853 | Streptococcus | Group I | Adrianbuildvirus | Adrianbuildvirus | Mcshanvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae USA11 | High-quality | High-quality | 92.670 | AAI-based (high-confidence) | Adrianbuildvirus | Adrianbuildvirus IPP44 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_4;antirepressor orf_12;integrase orf_26 |
| KY065485 | Streptococcus phage IPP45 | 37387 | 40.439 | Streptococcus | Group I | Malkevirus | Malkevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 670 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Malkevirus | Malkevirus IPP45 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_5;integrase orf_32 |