INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KX431560	Cronobacter phage vB_CsaM_leN	179516	44.897	Cronobacter	Group I	Pseudotevenvirus	Pseudotevenvirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cronobacter sakazakii ATCC BAA894	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pseudotevenvirus	Pseudotevenvirus leb	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX431888	Pseudomonas phage UNO-SLW1	39215	57.899	Pseudomonas	Group I	Unosvirus	Unosvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas sp.	High-quality	High-quality	97.230	AAI-based (high-confidence)	Unosvirus	Unosvirus UNOSLW1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KX438380	Salmonella phage vB-SalM-PM10	158081	44.608	Salmonella	Group I	Kuttervirus	Kuttervirus	Cvivirinae	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kuttervirus	Kuttervirus PM10	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX443326	Mycobacterium phage BruceB	41901	66.564	Mycobacterium	Group I	Liefievirus	Liefievirus	Gclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.370	AAI-based (high-confidence)	Liefievirus	Liefievirus halo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32;immunity orf_33
KX443552	Cronobacter phage vB_CsaM_leE	181570	44.680	Cronobacter	Group I	Pseudotevenvirus	Pseudotevenvirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cronobacter sakazakii ATCC BAA894	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pseudotevenvirus	Pseudotevenvirus lee	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX443695	Arthrobacter phage Courtney3	15556	60.105	Arthrobacter	Group I	Decurrovirus	Decurrovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	99.700	AAI-based (high-confidence)	Decurrovirus	Decurrovirus decurro	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX443696	Mycobacterium phage Laurie	66507	68.955	Mycobacterium	Group I	Rosebushvirus	Rosebushvirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.430	AAI-based (high-confidence)	Rosebushvirus	Rosebushvirus laurie	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KX449361	Pseudomonas phage UNO-SLW2	39167	57.891	Pseudomonas	Group I	Unosvirus	Unosvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas sp.	High-quality	High-quality	97.080	AAI-based (high-confidence)	Unosvirus	Unosvirus UNOSLW1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KX449362	Pseudomonas phage UNO-SLW3	39092	57.874	Pseudomonas	Group I	Unosvirus	Unosvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas sp.	High-quality	High-quality	96.920	AAI-based (high-confidence)	Unosvirus	Unosvirus UNOSLW1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KX449363	Pseudomonas phage UNO-SLW4	39136	57.890	Pseudomonas	Group I	Unosvirus	Unosvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas sp.	High-quality	High-quality	97.030	AAI-based (high-confidence)	Unosvirus	Unosvirus UNOSLW1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic