INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle
KX397367	Erwinia phage vB_EamM_EarlPhillipIV	223935	50.589	Erwinia	Group I	Derbicusvirus	Derbicusvirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia amylovora ATCC 29780	High-quality	High-quality	99.470	AAI-based (high-confidence)	Derbicusvirus	Derbicusvirus derbicus	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX397368	Erwinia phage vB_EamM_Huxley	240761	51.069	Erwinia	Group I	Machinavirus	Machinavirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia amylovora ATCC 29780	High-quality	High-quality	99.510	AAI-based (high-confidence)	Machinavirus	Machinavirus machina	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX397369	Erwinia phage vB_EamM_Kwan	246390	52.102	Erwinia	Group I	Wellingtonvirus	Wellingtonvirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia amylovora ATCC 29780	High-quality	High-quality	99.120	AAI-based (high-confidence)	Wellingtonvirus	Wellingtonvirus wellington	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX397370	Erwinia phage Machina	241654	51.013	Erwinia	Group I	Machinavirus	Machinavirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia amylovora ATCC 29780	High-quality	High-quality	99.880	AAI-based (high-confidence)	Machinavirus	Machinavirus machina	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX397371	Erwinia phage vB_EamM_Parshik	241050	51.038	Erwinia	Group I	Machinavirus	Machinavirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia amylovora ATCC 29780	High-quality	High-quality	99.630	AAI-based (high-confidence)	Machinavirus	Machinavirus machina	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX397372	Erwinia phage vB_EamM_Phobos	229501	49.137	Erwinia	Group I	Derbicusvirus	Derbicusvirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia amylovora ATCC 29780	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
KX397373	Erwinia phage vB_EamM_Stratton	243953	51.332	Erwinia	Group I	Erskinevirus	Erskinevirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia amylovora ATCC 29780	High-quality	High-quality	99.230	AAI-based (high-confidence)	Erskinevirus	Erskinevirus EaH2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX405002	Salmonella phage BPS11Q3	43788	49.705	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Enteritidis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus BPS11Q3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX405003	Salmonella phage BPS15Q2	89817	38.857	Salmonella	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Heidelberg	High-quality	High-quality	100.000	AAI-based (high-confidence)	Felixounavirus	Felixounavirus BPS15Q2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX431559	Cronobacter phage vB_CsaM_leB	177907	44.871	Cronobacter	Group I	Pseudotevenvirus	Pseudotevenvirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cronobacter sakazakii ATCC BAA894	High-quality	High-quality	99.890	AAI-based (high-confidence)	Pseudotevenvirus	Pseudotevenvirus leb	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic