INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KR296695	Salmonella phage 41	91721	45.594	Salmonella	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella paratyphi A	Medium-quality	Genome-fragment	74.810	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	antirepressor orf_30;cro orf_56
KR337643	Propionibacterium phage MrAK	29726	54.417	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes ATCC 6919	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus mrAK	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR337644	Propionibacterium phage Procrass1	29347	54.040	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes ATCC 6919	High-quality	High-quality	99.620	AAI-based (high-confidence)	Pahexavirus	Pahexavirus procrass1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR337645	Propionibacterium phage Kubed	29461	54.526	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes ATCC 6919	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus kubed	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR337646	Propionibacterium phage Wizzo	29463	54.441	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes ATCC 6919	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus wizzo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR337647	Propionibacterium phage Solid	29440	53.916	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes ATCC 6919	High-quality	High-quality	99.940	AAI-based (high-confidence)	Pahexavirus	Pahexavirus solid	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR337648	Propionibacterium phage SKKY	29594	54.599	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes ATCC 6919	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus SKKY	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR337649	Propionibacterium phage Keiki	29339	54.027	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes ATCC 6919	High-quality	High-quality	99.590	AAI-based (high-confidence)	Pahexavirus	Pahexavirus keiki	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR337650	Propionibacterium phage Lauchelly	29517	53.860	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes ATCC 6919	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus lauchelly	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR337651	Propionibacterium phage Attacne	28876	54.706	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes ATCC 6919	High-quality	High-quality	98.020	AAI-based (high-confidence)	Pahexavirus	Pahexavirus attacne	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic