Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KR153145Streptococcus phage APCM013107539.028StreptococcusGroup I AliceevansviridaeUnclassifiedUnclassifiedAliceevansviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus mutans DPC6143High-qualityHigh-quality99.380AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
KR153873Delftia phage IME-DE13808460.427DelftiaGroup I PiedvirusPiedvirusUnclassifiedAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Delftia sp. 670High-qualityHigh-quality100.000AAI-based (high-confidence) PiedvirusPiedvirus IMEDE1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KR233164Salmonella phage NR0111132538.838SalmonellaGroup I TequintavirusTequintavirusMarkadamsvirinaeDemerecviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella typhimuriumHigh-qualityHigh-quality98.480AAI-based (high-confidence) TequintavirusTequintavirus NR01The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
KR233165Escherichia phage PEC0416755235.472EscherichiaGroup I TequatrovirusTequatrovirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli O157:H7High-qualityHigh-quality99.660AAI-based (high-confidence) TequatrovirusTequatrovirus hy01Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KR262148Klebsiella phage KLPN14903750.525KlebsiellaGroup I WebervirusWebervirusUnclassifiedDrexlerviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniae subsp. pneumoniae L4-FAA5 (capsular type K2)High-qualityHigh-quality98.980AAI-based (high-confidence) WebervirusWebervirus KLPN1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KR269718Escherichia phage HY0317077035.302EscherichiaGroup I TequatrovirusTequatrovirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli O157:H7 ATCC 43890High-qualityHigh-quality100.000AAI-based (high-confidence) TequatrovirusTequatrovirus hy03Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KR269719Klebsiella phage PKP1265093450.730KlebsiellaGroup I WebervirusWebervirusUnclassifiedDrexlerviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniae KCTC 2242High-qualityHigh-quality100.000AAI-based (high-confidence) WebervirusWebervirus PKP126Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KR269720Klebsiella phage PKO11116875839.394KlebsiellaGroup I JiaodavirusJiaodavirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella oxytoca ATCC 43863High-qualityHigh-quality100.000AAI-based (high-confidence) JiaodavirusJiaodavirus pko111Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KR270151Salmonella phage f18SE4186849.799SalmonellaGroup I JerseyvirusJerseyvirusGuernseyvirinaeSarkviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. enteritidisHigh-qualityHigh-quality97.540AAI-based (high-confidence) JerseyvirusJerseyvirus f18SECurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KR296684Salmonella phage 199476645.642SalmonellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella paratyphi AMedium-qualityGenome-fragment74.540AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
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