INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ON911715 | Staphylococcus phage SAP-2 | 43863 | 34.020 | Staphylococcus | Group I | Rosenblumvirus | Rosenblumvirus | Rakietenvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus RN4220 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_4;cro orf_5;antirepressor orf_6;integrase orf_36 |
| ON911716 | Staphylococcus phage SAP3_TA-2022 | 43586 | 34.591 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus RN4220 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_8;integrase orf_36 |
| ON911717 | Staphylococcus phage SAP8_Andrews | 42981 | 34.103 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus RN4220 | High-quality | High-quality | 99.750 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_5;antirepressor orf_6;integrase orf_30 |
| ON911718 | Staphylococcus phage SAP13_TA-2022 | 43478 | 34.601 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus RN4220 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_4;cro orf_5;antirepressor orf_6;integrase orf_34 |
| ON920540 | Actinomyces phage LC001 | 26219 | 65.758 | Actinomyces | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Schalia odontolyticus XH001 | Medium-quality | Genome-fragment | 87.560 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| ON922917 | Riemerella phage vB_RanS_PT33 | 43763 | 34.810 | Riemerella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Riemerella anatipestifer | High-quality | High-quality | 94.410 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_45;antirepressor orf_70 |
| ON922918 | Escherichia phage vB_EcoM_PD328 | 59156 | 43.845 | Escherichia | Group I | Nonagvirus | Nonagvirus | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | Nonagvirus | Nonagvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON922919 | Escherichia phage vB_EcoM_PD205 | 71789 | 42.954 | Escherichia | Group I | Gamaleyavirus | Gamaleyavirus | Enquatrovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | Gamaleyavirus | Gamaleyavirus Pd205 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON922920 | Salmonella phage vB_SalS_PC192 | 39095 | 48.290 | Salmonella | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | Berlinvirus | Berlinvirus PC127 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON922990 | Vibrio phage VPMCC14 | 134472 | 34.520 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |