INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
ON872379	Vibrio phage vB_VpaP_1701	43975	49.692	Vibrio	Group I	Maculvirus	Maculvirus	Unclassified	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio parahaemolyticus	Complete	High-quality	100.000	DTR (high-confidence)	Maculvirus	Maculvirus MGD1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
ON880501	Klebsiella phage vB_KpnP1	40352	53.088	Klebsiella	Group I	Przondovirus	Przondovirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Przondovirus	Przondovirus KpnP1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
ON881243	Bacillus phage PK-3	142569	33.962	Bacillus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus sp.	Medium-quality	Genome-fragment	86.750	AAI-based (high-confidence)	Zhangjivirus	Zhangjivirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	parA orf_71
ON881905	Klebsiella phage vB_KpnS-VAC111	50559	50.539	Klebsiella	Group I	Webervirus	Webervirus	Unclassified	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae clinical strain	High-quality	High-quality	100.000	AAI-based (high-confidence)	Webervirus	Webervirus VAC111	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
ON886116	Salmonella phage PSP2-22	40428	50.101	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella enterica subsp. enterica serovar Pullorum	Medium-quality	Genome-fragment	84.290	HMM-based (lower-bound)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
ON897768	Klebsiella phage vB_KpnP_ZX10	39301	53.136	Klebsiella	Group I	Przondovirus	Przondovirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Complete	High-quality	100.000	DTR (high-confidence)	Przondovirus	Przondovirus ZX10	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_19
ON911538	Xanthomonas phage vB_Xar_IVIA-DoCa1	43553	54.423	Xanthomonas	Group I	Septimatrevirus	Septimatrevirus	Jondennisvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas arboricola pv. juglandis IVIA 1317-1a	High-quality	High-quality	100.000	AAI-based (high-confidence)	Septimatrevirus	Septimatrevirus DoCa1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
ON911539	Xanthomonas phage vB_Xar_IVIA-DoCa2	42857	62.678	Xanthomonas	Group I	Pradovirus	Pradovirus	Gujervirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas arboricola pv. juglandis IVIA 1317-1a	High-quality	High-quality	96.440	AAI-based (high-confidence)	Pradovirus	Pradovirus IVIADoCa2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
ON911540	Xanthomonas phage vB_Xar_IVIA-DoCa3	58107	58.544	Xanthomonas	Group I	Nipunavirus	Nipunavirus	Queuovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas arboricola pv. juglandis IVIA 1317-1a	High-quality	High-quality	100.000	AAI-based (high-confidence)	Nipunavirus	Nipunavirus Doca3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
ON911714	Staphylococcus phage SAP1_TA-2022	43962	34.250	Staphylococcus	Group I	Dubowvirus	Dubowvirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus RN4220	High-quality	High-quality	100.000	AAI-based (high-confidence)	Dubowvirus	Dubowvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_4;cro orf_5;antirepressor orf_8;integrase orf_38