INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_029059 | Mycobacterium phage Edtherson | 51492 | 63.977 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.150 | AAI-based (high-confidence) | temperate | integrase orf_37;immunity orf_70 | |||
| NC_029060 | Gordonia phage GordDuk1 | 76276 | 50.653 | Gordonia | Group I | Gordtnkvirus | Gordtnkvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_67 | |||
| NC_029061 | Rhodoferax phage P26218 | 36315 | 56.696 | Rhodoferax | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodoferax sp. IMCC26218 | High-quality | High-quality | 97.160 | AAI-based (high-confidence) | lytic | ||||
| NC_029065 | Pseudomonas phage VCM | 98765 | 48.508 | Pseudomonas | Group I | Kremarvirus | Kremarvirus | Gorskivirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_029066 | Pseudomonas phage PS-1 | 48666 | 59.834 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas sp. 1-1-1b | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_31;antirepressor orf_70 | |||
| NC_029067 | Vibrio phage eugene 12A10 | 138234 | 37.954 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio sp. 12A10 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_029068 | Lactobacillus phage LfeSau | 31703 | 48.024 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus fermentum | High-quality | High-quality | 97.120 | AAI-based (high-confidence) | lytic | ||||
| NC_029070 | Cronobacter phage Dev-CD-23823 | 41620 | 53.840 | Cronobacter | Group I | Cronosvirus | Cronosvirus | Melnykvirinae | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.590 | AAI-based (high-confidence) | lytic | ||||
| NC_029071 | Salmonella phage 36 | 41085 | 43.522 | Salmonella | Group I | Tlsvirus | Tlsvirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella typhimurium | Medium-quality | Genome-fragment | 81.570 | AAI-based (high-confidence) | temperate | integrase orf_4 | |||
| NC_029073 | Geobacillus virus E3 | 141298 | 29.635 | Geobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_31;integrase orf_60;integrase orf_161;integrase orf_163 |