INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_025830 | Escherichia phage Av-05 | 120938 | 40.044 | Escherichia | Group I | Avunavirus | Avunavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 | High-quality | High-quality | 95.490 | AAI-based (high-confidence) | lytic | ||||
| NC_026010 | Shigella phage pSf-2 | 50109 | 45.443 | Shigella | Group I | Tunavirus | Tunavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri ATCC 12022 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_026013 | Microviridae IME-16 | 5755 | 37.063 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 99.250 | AAI-based (high-confidence) | unknown | ||||
| NC_026014 | Escherichia phage P88 | 35814 | 52.870 | Escherichia | Group I | Xuanwuvirus | Xuanwuvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K88 | High-quality | High-quality | 97.710 | AAI-based (high-confidence) | temperate | integrase orf_1 | |||
| NC_026016 | Staphylococcus phage phiBU01 | 43748 | 33.016 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus HIP07256 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_33;antirepressor orf_56;antirepressor orf_58;cro orf_59;cro orf_60;integrase orf_67 | |||
| NC_026017 | Salmonella phage LSPA1 | 41880 | 50.487 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella paratyphi A CMCC50973 | High-quality | High-quality | 97.660 | AAI-based (high-confidence) | lytic | ||||
| NC_026583 | Mycobacterium phage Alvin | 49577 | 63.628 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 95.490 | AAI-based (high-confidence) | temperate | integrase orf_37;immunity orf_69 | |||
| NC_026584 | Mycobacterium phage Minerva | 109871 | 60.745 | Mycobacterium | Group I | Omegavirus | Omegavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.030 | AAI-based (high-confidence) | temperate | integrase orf_80 | |||
| NC_026585 | Mycobacterium phage Estave1 | 60727 | 61.324 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_42;immunity orf_44;antirepressor orf_45 | |||
| NC_026586 | Pseudomonas phage vB_PaeM_PAO1_Ab27 | 66299 | 55.668 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic |