INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_023580 | Mycobacterium phage Saal | 57775 | 61.289 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_42;immunity orf_46;antirepressor orf_48 | |||
| NC_023581 | Acinetobacter phage Presley | 77792 | 37.766 | Acinetobacter | Group I | Presleyvirus | Presleyvirus | Unclassified | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii M2 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_023582 | Staphylococcus phage vB_SepS_SEP9 | 92417 | 29.568 | Staphylococcus | Group I | Sextaecvirus | Sextaecvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis strain M129 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_37 | |||
| NC_023583 | Pseudomonas phage TL | 45696 | 52.366 | Pseudomonas | Group I | Bruynoghevirus | Bruynoghevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_023584 | Synechococcus phage S-MbCM100 | 170438 | 39.369 | Synechococcus | Group I | Acionnavirus | Acionnavirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 97.440 | AAI-based (high-confidence) | lytic | ||||
| NC_023585 | Sulfolobus monocaudavirus SMV1 | 48775 | 38.421 | Sulfolobus | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Sulfolobus solfataricus P2 | High-quality | High-quality | 91.910 | AAI-based (high-confidence) | temperate | integrase orf_21;integrase orf_34 | |||
| NC_023586 | Ralstonia phage 1 NP-2014 | 8460 | 58.487 | Ralstonia | Group II | Inoviridae | Unclassified | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1 | |||
| NC_023587 | Synechococcus phage ACG-2014h | 189311 | 40.491 | Synechococcus | Group I | Sedonavirus | Sedonavirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 98.920 | AAI-based (high-confidence) | lytic | ||||
| NC_023588 | Stenotrophomonas phage Smp131 | 33525 | 65.023 | Stenotrophomonas | Group I | Simpcentumvirus | Simpcentumvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_40 | |||
| NC_023589 | Shigella phage pSb-1 | 71629 | 42.742 | Shigella | Group I | Gamaleyavirus | Gamaleyavirus | Enquatrovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella boydii ATCC 35966 | High-quality | High-quality | 99.330 | AAI-based (high-confidence) | lytic |