INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_018274 | Pseudomonas phage MP42 | 36847 | 64.198 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PA14 | High-quality | High-quality | 96.870 | AAI-based (high-confidence) | temperate | cro orf_1;integrase orf_6 | |||
| NC_018275 | Salmonella phage vB_SemP_Emek | 39783 | 47.651 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella serovar Haardt | High-quality | High-quality | 97.060 | AAI-based (high-confidence) | temperate | antirepressor orf_23;integrase orf_25;integrase orf_40;cro orf_44 | |||
| NC_018276 | Croceibacter phage P2559S | 44988 | 41.853 | Croceibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Croceibacter atlanticus HTCC2559 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_018277 | Staphylococcus phage SpaA1 | 42784 | 35.635 | Staphylococcus | Group I | Beceayunavirus | Beceayunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus pasteuri | High-quality | High-quality | 96.520 | AAI-based (high-confidence) | temperate | integrase orf_20;integrase orf_31;antirepressor orf_39 | |||
| NC_018278 | Burkholderia phage vB_BceS_KL1 | 42832 | 54.606 | Burkholderia | Group I | Kilunavirus | Kilunavirus | Jondennisvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia cenocepacia C6433 | High-quality | High-quality | 99.980 | AAI-based (high-confidence) | temperate | cro orf_40 | |||
| NC_018279 | Salmonella phage vB_SosS_Oslo | 49116 | 48.738 | Salmonella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella serovar Winston | High-quality | High-quality | 97.840 | AAI-based (high-confidence) | temperate | integrase orf_33;integrase orf_46;cro orf_53;cro orf_54 | |||
| NC_018280 | Celeribacter phage P12053L | 38889 | 46.100 | Celeribacter | Group I | Siovirus | Siovirus | Cobavirinae | Zobellviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Celeribacter sp. IMCC12053 | High-quality | High-quality | 97.420 | AAI-based (high-confidence) | lytic | ||||
| NC_018281 | Staphylococcus phage vB_SepiS-phiIPLA5 | 43581 | 34.726 | Staphylococcus | Group I | Rockefellervirus | Rockefellervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_33;antirepressor orf_42 | |||
| NC_018282 | Pseudomonas phage MP1412 | 61167 | 64.283 | Pseudomonas | Group I | Yuavirus | Yuavirus | Rabinowitzvirinae | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 99.700 | AAI-based (high-confidence) | lytic | ||||
| NC_018283 | Burkholderia phage vB_BceS_AH2 | 58065 | 61.314 | Burkholderia | Group I | Ahduovirus | Ahduovirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia cenocepacia C6433 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_37 |