INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MZ375232 | Salmonella phage seszw | 45807 | 45.927 | Salmonella | Group I | Skatevirus | Skatevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | High-quality | High-quality | 97.700 | AAI-based (high-confidence) | Skatevirus | Skatevirus Seszw1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MZ375754 | Burkholderia phage PK23 | 35343 | 65.122 | Burkholderia | Group I | Duodecimduovirus | Duodecimduovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia pseudomallei | High-quality | High-quality | 94.390 | AAI-based (high-confidence) | Duodecimduovirus | Duodecimduovirus phiE122 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ384014 | Bacillus phage DLn1 | 25379 | 30.659 | Bacillus | Group I | Hemphillvirus | Hemphillvirus | Northropvirinae | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus | High-quality | High-quality | 96.520 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| MZ388554 | Microbacterium phage EugeneKrabs | 54754 | 58.418 | Microbacterium | Group I | Akonivirus | Akonivirus | Eekayvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| MZ388556 | Gordonia phage Nithya | 61092 | 51.326 | Gordonia | Group I | Kenoshavirus | Kenoshavirus | Deejayvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia rubripertincta NRRL B-16540 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kenoshavirus | Kenoshavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ394712 | Escherichia phage U1G | 73275 | 42.953 | Escherichia | Group I | Gamaleyavirus | Gamaleyavirus | Enquatrovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Colistin resistant Escherichia coli clinical isolate U1007 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gamaleyavirus | Gamaleyavirus U1g | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ398021 | Klebsiella phage BUCT_47333 | 47333 | 49.160 | Klebsiella | Group I | Ringroadvirus | Ringroadvirus | Jameshumphriesvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.540 | AAI-based (high-confidence) | Ringroadvirus | Ringroadvirus BUCT47333 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MZ398240 | Stenotrophomonas phage BUCT627 | 61860 | 56.279 | Stenotrophomonas | Group I | Bixiavirus | Bixiavirus | Beaumontvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia | High-quality | High-quality | 99.840 | AAI-based (high-confidence) | Bixiavirus | Bixiavirus BUCT627 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ398241 | Stenotrophomonas phage BUCT626 | 61662 | 56.193 | Stenotrophomonas | Group I | Bixiavirus | Bixiavirus | Beaumontvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia | High-quality | High-quality | 99.540 | AAI-based (high-confidence) | Bixiavirus | Bixiavirus BUCT626 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ398242 | Klebsiella phage IME268 | 49552 | 50.450 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Webervirus | Webervirus IME268 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |