INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MZ322028	Gordonia phage Posh	52295	66.110	Gordonia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_39;immunity orf_43;antirepressor orf_47
MZ322319	Pseudomonas phage vB_Pae-PA152	74434	53.562	Pseudomonas	Group I	Luzseptimavirus	Luzseptimavirus	Migulavirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa ATCC 27853	High-quality	High-quality	100.000	AAI-based (high-confidence)	Luzseptimavirus	Luzseptimavirus KPP21	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ322895	Klebsiella phage vB_KpnM_VAC13	174826	41.890	Klebsiella	Group I	Slopekvirus	Slopekvirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	Complete	High-quality	100.000	DTR (high-confidence)	Slopekvirus	Slopekvirus eap3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ326168	Salmonella phage NINP13076	161329	44.417	Salmonella	Group I	Seunavirus	Seunavirus	Vequintavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica CDC K-1891	High-quality	High-quality	100.000	AAI-based (high-confidence)	Seunavirus	Seunavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MZ326857	Stenotrophomonas phage Piffle	76332	54.855	Stenotrophomonas	Group I	Pokkenvirus	Pokkenvirus	Gebvirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Stenotrophomonas maltophilia	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pokkenvirus	Pokkenvirus piffle	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ326858	Stenotrophomonas phage Pepon	42532	60.039	Stenotrophomonas	Group I	Ponderosavirus	Ponderosavirus	Gujervirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Stenotrophomonas maltophilia	High-quality	High-quality	98.980	AAI-based (high-confidence)	Ponderosavirus	Ponderosavirus pepon	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ326859	Stenotrophomonas phage Siara	61427	56.500	Stenotrophomonas	Group I	Siaravirus	Siaravirus	Beaumontvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Stenotrophomonas maltophilia	High-quality	High-quality	100.000	AAI-based (high-confidence)	Siaravirus	Siaravirus siara	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ326863	Burkholderia phage Paku	42727	61.863	Burkholderia	Group I	Pakuvirus	Pakuvirus	Unclassified	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Burkholderia cenocepacia	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pakuvirus	Pakuvirus paku	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_46
MZ326864	Alcaligenes phage Piluca	35451	40.851	Alcaligenes	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Alcaligenes faecalis	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_6
MZ326868	Stenotrophomonas phage Marzo	159384	54.007	Stenotrophomonas	Group I	Menderavirus	Menderavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Stenotrophomonas maltophilia	High-quality	High-quality	99.860	AAI-based (high-confidence)	Menderavirus	Menderavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic