INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MW980066 | Rhizobium phage RHEph16 | 77178 | 45.478 | Rhizobium | Group I | Acanvirus | Acanvirus | Demetervirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli sv. phaseoli N1314 | High-quality | High-quality | 99.320 | AAI-based (high-confidence) | Acanvirus | Acanvirus Rheph16 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW980067 | Rhizobium phage RHEph17 | 6053 | 58.946 | Rhizobium | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Rhizobium etli sv. phaseoli N741 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MW980068 | Rhizobium phage RHEph18 | 44197 | 59.095 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli sv. phaseoli N561 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_26 |
| MW980069 | Rhizobium phage RHEph19 | 67843 | 56.489 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli sv. phaseoli N561 | High-quality | High-quality | 97.730 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MW980070 | Rhizobium phage RHEph21 | 40454 | 58.602 | Rhizobium | Group I | Chamilpavirus | Chamilpavirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium gallicum sv. phaseoli R72 | High-quality | High-quality | 96.290 | AAI-based (high-confidence) | Chamilpavirus | Chamilpavirus RHEph21 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_3 |
| MW980071 | Rhizobium phage RHEph22 | 77655 | 45.912 | Rhizobium | Group I | Acanvirus | Acanvirus | Demetervirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli sv. phaseoli R744 | High-quality | High-quality | 99.920 | AAI-based (high-confidence) | Acanvirus | Acanvirus Rheph22 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW980072 | Rhizobium phage RHEph24 | 77615 | 45.999 | Rhizobium | Group I | Schitoviridae | Unclassified | Unclassified | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli sv. phaseoli R650 | High-quality | High-quality | 99.870 | AAI-based (high-confidence) | Acanvirus | Acanvirus Rheph22 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW980073 | Rhizobium phage RHEph26 | 53859 | 56.421 | Rhizobium | Group I | Kleczkowskavirus | Kleczkowskavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli sv. phaseoli GR56 | High-quality | High-quality | 99.470 | AAI-based (high-confidence) | Kleczkowskavirus | Kleczkowskavirus RHEph4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW980074 | Rhizobium phage RHEph27 | 46040 | 56.249 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli sv. phaseoli CFN42 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tepoztlanvirus | Tepoztlanvirus RHphTM34 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ004649 | Salmonella phage vB_STM-ZS | 40542 | 51.130 | Salmonella | Group I | Cornellvirus | Cornellvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium ATCC 14028 | High-quality | High-quality | 95.320 | AAI-based (high-confidence) | Cornellvirus | Cornellvirus ZS | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |