INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MW960037 | Rhizobium phage RHph_X2_26 | 68522 | 59.131 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sinorhizobium americanum X2_26 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MW960038 | Rhizobium phage RHph_X3_15 | 76185 | 45.090 | Rhizobium | Group I | Schitoviridae | Unclassified | Unclassified | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sinorhizobium americanum X3_15 | High-quality | High-quality | 99.890 | AAI-based (high-confidence) | Xoxocotlavirus | Xoxocotlavirus X228B | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW960043 | Stenotrophomonas phage BUCT609 | 43145 | 58.285 | Stenotrophomonas | Group I | Maltophvirus | Maltophvirus | Gujervirinae | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Maltophvirus | Maltophvirus BUCT609 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW965453 | Ralstonia phage vB_RsoP_BMB50 | 43665 | 61.791 | Ralstonia | Group I | Hongshanvirus | Hongshanvirus | Okabevirinae | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum RS3220-1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Hongshanvirus | Hongshanvirus BMB50 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW978786 | Aeromonas phage BUCT552 | 59685 | 60.032 | Aeromonas | Group I | Casjensviridae | Unclassified | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas hydrophila | High-quality | High-quality | 99.580 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MW980061 | Rhizobium phage RHph_X2_30 | 69699 | 57.034 | Rhizobium | Group I | Casjensviridae | Unclassified | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sinorhizobium americanum X2_30 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MW980062 | Rhizobium phage RHph_I40 | 46695 | 49.142 | Rhizobium | Group I | Cuernavacavirus | Cuernavacavirus | Dunnvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium leguminosarum sv. phaseoli CIAT894 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cuernavacavirus | Cuernavacavirus RHphI38 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW980063 | Rhizobium phage RHph_N46 | 192456 | 53.475 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli sv. phaseoli IE1004 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MW980064 | Rhizobium phage RHEph12 | 193606 | 53.390 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli sv. giardinii IE4771 | High-quality | High-quality | 95.100 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_232;integrase orf_273 |
| MW980065 | Rhizobium phage RHEph15 | 46206 | 56.291 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli sv. phaseoli N1314 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tepoztlanvirus | Tepoztlanvirus RHphTM34 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |