INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MW495853 | Streptococcus phage A1 | 37239 | 37.915 | Streptococcus | Group I | Stonewallvirus | Stonewallvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pyogenes ATCC 12202-B1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Stonewallvirus | Stonewallvirus A25 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_6;integrase orf_53 |
| MW505928 | Propionibacterium phage TCUCAP1 | 29547 | 53.826 | Propionibacterium | Group I | Pahexavirus | Pahexavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cutibacterium acnes | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pahexavirus | Pahexavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW507123 | Mycobacterium phage Rubeus | 49040 | 63.723 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 94.460 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_71 |
| MW507124 | Microbacterium phage BlueRugrat | 54124 | 60.247 | Microbacterium | Group I | Tinytimothyvirus | Tinytimothyvirus | Eekayvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tinytimothyvirus | Tinytimothyvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MW507125 | Gordonia phage Phlop | 58358 | 67.944 | Gordonia | Group I | Wizardvirus | Wizardvirus | Frickvirinae | Stackebrandtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 98.400 | AAI-based (high-confidence) | Wizardvirus | Wizardvirus phlop | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_21;integrase orf_44;integrase orf_47 |
| MW507126 | Microbacterium phage Shocker | 45431 | 63.043 | Microbacterium | Group I | Shockervirus | Shockervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium paraoxydans NRRL B-14843 | Complete | High-quality | 100.000 | DTR (high-confidence) | Shockervirus | Shockervirus shocker | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW507127 | Microbacterium phage Wolfpack | 17455 | 68.542 | Microbacterium | Group I | Paopuvirus | Paopuvirus | Pelczarvirinae | Orlajensenviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Paopuvirus | Paopuvirus quaker | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW507128 | Mycobacterium phage Phoebe | 50876 | 64.005 | Mycobacterium | Group I | Microwolfvirus | Microwolfvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Microwolfvirus | Microwolfvirus JHC117 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32;immunity orf_70 |
| MW507129 | Gordonia phage Ennea | 67632 | 65.669 | Gordonia | Group I | Skysandvirus | Skysandvirus | Emilbogenvirinae | Zierdtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrea 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Skysandvirus | Skysandvirus lollipop1437 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW507130 | Gordonia Phage Whiteclaw | 46221 | 66.632 | Gordonia | Group I | Attisvirus | Attisvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Attisvirus | Attisvirus ebert | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36;immunity orf_42 |