INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MW460249 | Pseudomonas phage Itty13 | 61818 | 65.515 | Pseudomonas | Group I | Ittyvirus | Ittyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 99.790 | AAI-based (high-confidence) | Ittyvirus | Ittyvirus itty13 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_75 |
| MW460250 | Staphylococcus phage SAOMS1 | 140135 | 30.366 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 98.970 | AAI-based (high-confidence) | Kayvirus | Kayvirus G1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW462221 | Campylobacter phage CAM-P21 | 39746 | 30.164 | Campylobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Campylobacter coli CAN 10 | Low-quality | Genome-fragment | 18.570 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MW464860 | Enterobacter phage EC151 | 60753 | 47.693 | Enterobacter | Group I | Queuovirinae | Unclassified | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter cloacae CEMTC 2064 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MW476489 | Lactobacillus phage vB_Lga_AB1 | 40899 | 36.030 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus gasseri | High-quality | High-quality | 96.860 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;antirepressor orf_8 |
| MW476490 | Lactobacillus phage vB_Lcr_AB1 | 47292 | 40.654 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus crispatus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;cro orf_6;antirepressor orf_7 |
| MW477480 | Bacillus phage Whiting18 | 19548 | 39.636 | Bacillus | Group I | Salasvirus | Salasvirus | Picovirinae | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus sp.203 | High-quality | High-quality | 99.830 | AAI-based (high-confidence) | Salasvirus | Salasvirus PZA | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW477799 | Salmonella phage vB_Se_STGO-35-1 | 47483 | 46.488 | Salmonella | Group I | Caminolopintovirus | Caminolopintovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Caminolopintovirus | Caminolopintovirus STGO351 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MW481326 | Escherichia phage vB_EcoM-Pr103Blw | 88421 | 38.725 | Escherichia | Group I | Felixounavirus | Felixounavirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli STEC O103 | Complete | High-quality | 100.000 | DTR (high-confidence) | Felixounavirus | Felixounavirus Pr103Blw | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW495044 | Klebsiella phage vB_KpnP_P184 | 76617 | 44.340 | Klebsiella | Group I | Efbeekayvirus | Efbeekayvirus | Waldeevirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae 184 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Efbeekayvirus | Efbeekayvirus P184 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_1 |