Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
MW345254Cronobacter phage vB_CtuP_B13946051.488CronobacterGroup I KayfunavirusKayfunavirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Cronobacter sp.CompleteHigh-quality100.000DTR (high-confidence) KayfunavirusKayfunavirus B1The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
MW348917Bacillus phage Thornton2631930.487BacillusGroup I ClaudivirusClaudivirusNorthropvirinaeSalasmaviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacillus thuringiensis subspecies kurstakiHigh-qualityHigh-quality100.000AAI-based (high-confidence) ClaudivirusClaudivirus thorntonCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MW349128Staphylococcus phage Machias27447824.753StaphylococcusGroup I MachiasvirusMachiasvirusWallmarkvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus aureusHigh-qualityHigh-quality100.000AAI-based (high-confidence) MachiasvirusMachiasvirus machiasCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MW349129Staphylococcus phage Madawaska26544625.132StaphylococcusGroup I MadawaskavirusMadawaskavirusWallmarkvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus aureusHigh-qualityHigh-quality99.590AAI-based (high-confidence) MadawaskavirusMadawaskavirus madawaskaCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MW349133Acinetobacter phage Liucustia10053337.111AcinetobacterGroup I SaclayvirusSaclayvirusUnclassifiedLuriaviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Acinetobacter baumannii NIPH201CompleteHigh-quality100.000DTR (high-confidence) SaclayvirusSaclayvirus LiucustiaCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MW349138Erwinia phage pEa_SNUABM_275301444.068ErwiniaGroup I FifivirusFifivirusCleopatravirinaeChaseviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Erwinia amylovoraHigh-qualityHigh-quality99.360AAI-based (high-confidence) FifivirusFifivirus SNUABM27Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MW353166Mycoplasma phage sp.3346923.586MycoplasmaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Mycoplasma anatis MYCAV786Medium-qualityGenome-fragment62.710HMM-based (lower-bound) New_genusNew_speciesNo hits were found with the default settingslytic
MW353167Mycoplasma phage sp.3116023.354MycoplasmaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Mycoplasma anatis MYCAV787Medium-qualityGenome-fragment58.380HMM-based (lower-bound) New_genusNew_speciesNo hits were found with the default settingslytic
MW353168Mycoplasma phage sp.3349323.596MycoplasmaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Mycoplasma anatis MYCAV788Medium-qualityGenome-fragment62.750HMM-based (lower-bound) New_genusNew_speciesNo hits were found with the default settingslytic
MW353169Mycoplasma phage sp.5994822.765MycoplasmaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Mycoplasma anserisalpingitidis MYCAV94High-qualityHigh-quality100.000HMM-based (lower-bound) New_genusNew_speciesNo hits were found with the default settingslytic
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