INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MW341595 | Shigella phage Sfk20 | 164878 | 35.615 | Shigella | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri 2a | High-quality | High-quality | 98.030 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus pss1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW343794 | Cronobacter phage A24 | 75106 | 44.051 | Cronobacter | Group I | Crifsvirus | Crifsvirus | Unclassified | Grimontviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | Crifsvirus | Crifsvirus A24 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW344054 | Vibrio phage Gary | 128602 | 40.195 | Vibrio | Group I | Thalassavirus | Thalassavirus | Ermolyevavirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio harveyi BAA-1116 | Complete | High-quality | 100.000 | DTR (high-confidence) | Thalassavirus | Thalassavirus gary | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW344055 | Vibrio phage GRLPWR | 128336 | 40.205 | Vibrio | Group I | Thalassavirus | Thalassavirus | Ermolyevavirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio harveyi BAA-1116 | Complete | High-quality | 100.000 | DTR (high-confidence) | Thalassavirus | Thalassavirus gary | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW344056 | Vibrio phage ABurr | 126843 | 40.237 | Vibrio | Group I | Thalassavirus | Thalassavirus | Ermolyevavirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio harveyi BAA-1116 | Complete | High-quality | 100.000 | DTR (high-confidence) | Thalassavirus | Thalassavirus cody | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW344764 | Halorubrum virus Humcor2 | 11758 | 58.386 | Halorubrum | Group II | Alphapleolipovirus | Alphapleolipovirus | Unclassified | Pleolipoviridae | Haloruvirales | Huolimaviricetes | Saleviricota | Trapavirae | Floreoviria | Halorubrum coriense | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MW344765 | Halorubrum virus Humcor1 | 46474 | 62.452 | Halorubrum | Group I | Graaviviridae | Unclassified | Unclassified | Graaviviridae | Kirjokansivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halorubrum coriense | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MW344766 | Haloferax virus Halfgib1 | 16280 | 56.486 | Haloferax | Group II | Pleolipoviridae | Unclassified | Unclassified | Pleolipoviridae | Haloruvirales | Huolimaviricetes | Saleviricota | Trapavirae | Floreoviria | Haloferax gibbonsii Ma2.38 | Not-determined | Genome-fragment | New_genus | New_species | No hits were found with the default settings | lytic | |||
| MW344767 | Haloarcula virus Harhisp1 | 19481 | 53.236 | Haloarcula | Group II | Pleolipoviridae | Unclassified | Unclassified | Pleolipoviridae | Haloruvirales | Huolimaviricetes | Saleviricota | Trapavirae | Floreoviria | Haloarcula hispanica | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MW345241 | Acinetobacter phage vB_AbaP_APK26 | 41097 | 39.261 | Acinetobacter | Group I | Friunavirus | Friunavirus | Beijerinckvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii strain KZ-1098 | Complete | High-quality | 100.000 | DTR (high-confidence) | Friunavirus | Friunavirus APK26 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |