INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MT900487 | Streptococcus phage 23TH | 32272 | 39.774 | Streptococcus | Group I | Phadecavirus | Phadecavirus | Mcshanvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus infantis 23TH | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Phadecavirus | Phadecavirus pv23TH | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_4;antirepressor orf_11;integrase orf_26 |
| MT900488 | Streptococcus phage SA01 | 36088 | 37.536 | Streptococcus | Group I | Aliceevansviridae | Unclassified | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus anginosus SA01 | High-quality | High-quality | 97.170 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| MT901797 | Erwinia phage PEar1 | 6646 | 41.679 | Erwinia | Group II | Inoviridae | Unclassified | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Erwinia amylovora strain Ea1 | High-quality | High-quality | 97.440 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MT901798 | Erwinia phage PEar2 | 6651 | 41.693 | Erwinia | Group II | Inoviridae | Unclassified | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Erwinia amylovora Ea1 | High-quality | High-quality | 97.510 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MT901799 | Erwinia phage PEar4 | 6801 | 41.656 | Erwinia | Group II | Inoviridae | Unclassified | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Erwinia amylovora Ea1 | High-quality | High-quality | 99.710 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MT901800 | Erwinia phage PEar6 | 6608 | 41.677 | Erwinia | Group II | Lineavirus | Lineavirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Erwinia amylovora Ea1 | High-quality | High-quality | 96.600 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MT902335 | Pasteurella phage vB_PmuP_Pa7 | 37402 | 40.877 | Pasteurella | Group I | Wuhanvirus | Wuhanvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pasteurella multocida | Complete | High-quality | 100.000 | DTR (high-confidence) | Wuhanvirus | Wuhanvirus PHB02 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT909815 | Enterococcus phage iF6 | 156592 | 37.061 | Enterococcus | Group I | Schiekvirus | Schiekvirus | Brockvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecium | Complete | High-quality | 100.000 | DTR (high-confidence) | Schiekvirus | Schiekvirus if6 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT920315 | Erwinia phage FBB1 | 175889 | 36.454 | Erwinia | Group I | Risoevirus | Risoevirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia tracheiphila BHKY | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MT926124 | Staphylococcus phage Portland | 17471 | 29.569 | Staphylococcus | Group I | Rosenblumvirus | Rosenblumvirus | Rakietenvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 98.740 | AAI-based (high-confidence) | Rosenblumvirus | Rosenblumvirus EBHT | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |