INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT897904	Mycobacterium phage Royals2015	57356	61.708	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.560	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus royals2015	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_41;immunity orf_43;antirepressor orf_45
MT897905	Streptomyces phage MulchMansion	134105	49.422	Streptomyces	Group I	Samistivirus	Samistivirus	Boydwoodruffvirinae	Stanwilliamsviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces viridochromogenes DSM40736	Complete	High-quality	100.000	DTR (high-confidence)	Samistivirus	Samistivirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT897906	Arthrobacter phage Tweety19	40873	66.124	Arthrobacter	Group I	Galvastonvirus	Galvastonvirus	Unclassified	Casidaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter globiformis B-2979	High-quality	High-quality	96.960	AAI-based (high-confidence)	Galvastonvirus	Galvastonvirus tweety19	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_48
MT897907	Mycobacterium phage Grif	50957	63.979	Mycobacterium	Group I	Microwolfvirus	Microwolfvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Microwolfvirus	Microwolfvirus JHC117	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32;immunity orf_70
MT897908	Streptomyces phage ShakeNBake	69299	64.236	Streptomyces	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces viridochromogenes DSM40736	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MT897909	Mycobacterium phage Maru	68684	66.438	Mycobacterium	Group I	Pegunavirus	Pegunavirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.860	AAI-based (high-confidence)	Pegunavirus	Pegunavirus soto	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT897910	Mycobacterium phage VioletZ	71294	68.916	Mycobacterium	Group I	Coopervirus	Coopervirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Coopervirus	Coopervirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT899443	Liberibacter phage P-PA19-2	31505	38.886	Liberibacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Candidatus Liberibacter asisticus	Medium-quality	Genome-fragment	80.790	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	antirepressor orf_23
MT899444	Liberibacter phage P-PA19-1	37601	40.901	Liberibacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Candidatus Liberibacter asiaticus	High-quality	High-quality	97.460	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	antirepressor orf_32
MT899504	Staphylococcus phage JD419	45509	33.536	Staphylococcus	Group I	Triavirus	Triavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	97.850	AAI-based (high-confidence)	Triavirus	Triavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_21;antirepressor orf_46;cro orf_48;integrase orf_53