INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HQ632860 | Vibrio phage jenny 12G5 | 40557 | 42.284 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio sp. 12G05 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_3 |
| HQ633071 | Synechococcus phage S-SKS1 | 208007 | 36.027 | Synechococcus | Group I | Llyrvirus | Llyrvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Llyrvirus | Llyrvirus SSKS1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ634152 | Prochlorococcus phage P-SSP6 | 47039 | 39.187 | Prochlorococcus | Group I | Tangaroavirus | Tangaroavirus | Sechaudvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus marinus MIT9515 | High-quality | High-quality | 99.510 | AAI-based (high-confidence) | Tangaroavirus | Tangaroavirus tv951510a | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| HQ634153 | Salicola phage CGphi29 | 40695 | 56.422 | Unspecified | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salicola sp. M5 MPN 10^-2 23B | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HQ634156 | Vibrio phage PWH3a-P1 | 129155 | 35.504 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio natriegens | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HQ634157 | Vibrio phage 11895-B1 | 126434 | 35.529 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio sp. 11985 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HQ634174 | Prochlorococcus phage MED4-213 | 180977 | 37.764 | Prochlorococcus | Group I | Eurybiavirus | Eurybiavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus MED4 | High-quality | High-quality | 99.540 | AAI-based (high-confidence) | Eurybiavirus | Eurybiavirus MED4213 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_184 |
| HQ634175 | Cyanophage P-RSM1 | 177211 | 40.194 | Prochlorococcus | Group I | Emcearvirus | Emcearvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus MIT9303 | Complete | High-quality | 100.000 | DTR (high-confidence) | Emcearvirus | Emcearvirus gerard | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| HQ634176 | Cyanophage P-RSM3 | 178750 | 36.747 | Prochlorococcus | Group I | Ronodorvirus | Ronodorvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus NATL2A | Complete | High-quality | 100.000 | DTR (high-confidence) | Ronodorvirus | Ronodorvirus ssm4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ634177 | Synechococcus phage S-CAM1 | 198013 | 43.025 | Synechococcus | Group I | Anaposvirus | Anaposvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | Complete | High-quality | 100.000 | DTR (high-confidence) | Anaposvirus | Anaposvirus socalone | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |