INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HQ396194 | Riemerella phage RAP44 | 49329 | 34.740 | Riemerella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Riemerella anatipestifer | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_15;antirepressor orf_42 |
| HQ403646 | Gordonia phage GTE2 | 45530 | 60.343 | Gordonia | Group I | Emalynvirus | Emalynvirus | Ceeteevirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae | High-quality | High-quality | 98.690 | AAI-based (high-confidence) | Emalynvirus | Emalynvirus GTE2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ406778 | Salmonella phage Spc35 | 118351 | 39.385 | Salmonella | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella Typhimurium; Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequintavirus | Tequintavirus SPC35 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| HQ424691 | Enterobacteria phage VT2phi_272 | 65955 | 50.104 | Enterobacteria | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain 71074 | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | Oslovirus | Oslovirus PA2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;integrase orf_2;antirepressor orf_8;antirepressor orf_13;antirepressor orf_33;cro orf_36;cro orf_37;antirepressor orf_55 |
| HQ615693 | Synechococcus phage S-CRM01 | 178563 | 39.745 | Synechococcus | Group I | Kyanoviridae | Unclassified | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. LC16 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HQ630627 | Pseudomonas phage PhiPA3 | 309208 | 47.725 | Pseudomonas | Group I | Miltoncavirus | Miltoncavirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa strain PAO1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Miltoncavirus | Miltoncavirus PhiPA3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ632825 | Prochlorococcus phage P-SSM5 | 252013 | 35.525 | Prochlorococcus | Group I | Salacisavirus | Salacisavirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus marinus NATL2A | Complete | High-quality | 100.000 | DTR (high-confidence) | Salacisavirus | Salacisavirus pssm2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ632857 | Tetraselmis viridis virus S20 | 38987 | 61.220 | Tetraselmis | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Tetraselmis viridis Rouch (Chlorophyta) | High-quality | High-quality | 98.960 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HQ632858 | Tetraselmis viridis virus SI1 | 39398 | 61.224 | Tetraselmis | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Tetraselmis viridis Rouch (Chlorophyta) | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HQ632859 | Loktanella phage pCB2051-A | 56958 | 54.976 | Loktanella | Group I | Broinstvirus | Broinstvirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Loktanella sp. CB2051 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Broinstvirus | Broinstvirus pCB2051A | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |