INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MT828551 | Yersinia phage PYPS2T | 169486 | 35.405 | Yersinia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pseudotuberculosis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus pyps2t | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT828552 | Yersinia phage PYps5T | 169375 | 35.355 | Yersinia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pseudotuberculosis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus oe5505 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT828553 | Yersinia phage PYps10T | 169493 | 35.404 | Yersinia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pseudotuberculosis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus pyps2t | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT829326 | Enterococcus phage FX417 | 41061 | 34.661 | Enterococcus | Group I | Efquatrovirus | Efquatrovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Efquatrovirus | Efquatrovirus LY0322 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT830620 | Escherichia phage MS2 | 3569 | 52.059 | Escherichia | Group IV | Emesvirus | Emesvirus | Unclassified | Fiersviridae | Norzivirales | Leviviricetes | Lenarviricota | Orthornavirae | Riboviria | Escherichia coli ATCC 700891 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MT833282 | Escherichia coli phage vB_EcoM_Shy | 88760 | 38.994 | Escherichia | Group I | Felixounavirus | Felixounavirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli NCTC 12900 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Felixounavirus | Felixounavirus shy | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT833283 | Escherichia coli phage vB_EcoS_Ace | 112791 | 39.962 | Escherichia | Group I | Epseptimavirus | Epseptimavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli CECT 5947 | High-quality | High-quality | 99.710 | AAI-based (high-confidence) | Epseptimavirus | Epseptimavirus ace | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MT833387 | Escherichia phage HF4s | 39390 | 47.469 | Escherichia | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 4s | High-quality | High-quality | 97.900 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_19;cro orf_38;antirepressor orf_39 |
| MT843274 | Escherichia phage BB1 | 110099 | 38.932 | Escherichia | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequintavirus | Tequintavirus BB1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MT843275 | Serratia phage vB_SspM_BZS1 | 44995 | 51.590 | Serratia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia sp. OS31 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_29 |