INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT818423	Mycobacterium phage Janiyra	156653	64.621	Mycobacterium	Group I	Bixzunavirus	Bixzunavirus	Ceeclamvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.190	AAI-based (high-confidence)	Bixzunavirus	Bixzunavirus quasimodo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT818424	Gordonia phage GemG	46225	66.611	Gordonia	Group I	Attisvirus	Attisvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Attisvirus	Attisvirus ebert	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_36;immunity orf_42
MT818425	Mycobacterium phage NiebruSaylor	70777	65.376	Mycobacterium	Group I	Corndogvirus	Corndogvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.290	AAI-based (high-confidence)	Corndogvirus	Corndogvirus vagabond	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT818426	Microbacterium phage Lifes	59253	58.459	Microbacterium	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium paraoxydans NRRL B-14843	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MT818427	Microbacterium phage AnnaLie	41665	66.593	Microbacterium	Group I	Dismasvirus	Dismasvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
MT822284	Erwinia phage pEp_SNUABM_03	39879	52.125	Erwinia	Group I	Studiervirinae	Unclassified	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia pyrifoliae	High-quality	High-quality	99.760	AAI-based (high-confidence)	Snaubvirus	Snaubvirus pEpSNUABM09	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT822285	Erwinia phage pEp_SNUABM_04	39649	52.193	Erwinia	Group I	Studiervirinae	Unclassified	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia pyrifoliae	High-quality	High-quality	99.180	AAI-based (high-confidence)	Snaubvirus	Snaubvirus pEpSNUABM09	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT822286	Erwinia phage pEp_SNUABM_10	39879	52.118	Erwinia	Group I	Studiervirinae	Unclassified	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia pyrifoliae	High-quality	High-quality	99.760	AAI-based (high-confidence)	Snaubvirus	Snaubvirus pEpSNUABM09	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT822287	Erwinia phage pEp_SNUABM_11	39626	52.097	Erwinia	Group I	Studiervirinae	Unclassified	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia pyrifoliae	High-quality	High-quality	99.130	AAI-based (high-confidence)	Snaubvirus	Snaubvirus pEpSNUABM09	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT822288	Erwinia phage pEp_SNUABM_12	39980	51.198	Erwinia	Group I	Ningirsuvirus	Ningirsuvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia pyrifoliae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ningirsuvirus	Ningirsuvirus pEpSNUABM12	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic